Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0925 ATGCTTCTCCACCCATTCTTACTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCACAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCCCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGTAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCGAGTATAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAACTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGAAACTTGCCTGTTCTAAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATGTCCCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCTAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTGCTGCGTTCAATCTTCGTCCTTGCCGGTATCGTGTTTATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCGGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGACACTCTGGGAAAGATTAGGCACAAAAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGCGTCCCTCCAATCGTTCATCGCGACGTTAAGTCAAACAACATCTTGTTGGATGGCGATTTTGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATTGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGTGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACCTAGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3009 46.1 MLLHPFLLFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASIGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8021185 8024295 + CrPI670011_03g009250.1 Cre03g0925 492955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0925 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Cre03g0925 1002 PANTHER RECEPTOR-LIKE PROTEIN 55 35 185 - -
Cre03g0925 1002 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0925 1002 Gene3D Ribonuclease Inhibitor 267 336 IPR032675 -
Cre03g0925 1002 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Cre03g0925 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0925 1002 Gene3D Phosphorylase Kinase; domain 1 653 776 - -
Cre03g0925 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 191 - -
Cre03g0925 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Cre03g0925 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Cre03g0925 1002 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cre03g0925 1002 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0925 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Cre03g0925 1002 SUPERFAMILY L domain-like 36 377 - -
Cre03g0925 1002 Gene3D Ribonuclease Inhibitor 187 266 IPR032675 -
Cre03g0925 1002 Gene3D Ribonuclease Inhibitor 337 621 IPR032675 -
Cre03g0925 1002 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Cre03g0925 1002 SUPERFAMILY RNI-like 270 605 - -
Cre03g0925 1002 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 SMART LRR_typ_2 216 240 IPR003591 -
Cre03g0925 1002 SMART LRR_typ_2 95 119 IPR003591 -
Cre03g0925 1002 SMART LRR_typ_2 288 312 IPR003591 -
Cre03g0925 1002 SMART LRR_typ_2 143 166 IPR003591 -
Cre03g0925 1002 SMART LRR_typ_2 503 526 IPR003591 -
Cre03g0925 1002 SMART LRR_typ_2 191 215 IPR003591 -
Cre03g0925 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Cre03g0925 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 362 381 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 269 288 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 577 596 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Cre03g0925 1002 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0572 Cre-Chr2:2785059 Cre03g0925 Cre-Chr3:8021185 2.60E-167 dispersed
Cre03g0925 Cre-Chr3:8021185 Cre10g0980 Cre-Chr10:14300229 1.30E-89 dispersed
Cre04g0127 Cre-Chr4:3138821 Cre03g0925 Cre-Chr3:8021185 6.10E-24 dispersed
Cre03g0925 Cre-Chr3:8021185 Cre04g1942 Cre-Chr4:36928772 8.00E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63966 PF00069 Pkinase 1.50E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0925 - - - 0.0