Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0949 ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATATGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAACAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCCAACAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTACTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCGGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA 537 47.67 MVMGERKNNNEDQYEGGIKLFGATIMLQNNRQIKEEEEEEEEEANKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8251636 8252172 - CrPI670011_03g009490.1 Cre03g0949 492979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0949 178 Coils Coil 23 53 - -
Cre03g0949 178 Pfam Dof domain, zinc finger 58 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0949 178 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0949 178 PANTHER CYCLIC DOF FACTOR 2 27 114 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Cre03g0949 178 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0949 178 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0949 Cre-Chr3:8251636 Cre10g1722 Cre-Chr10:31490755 2.40E-31 dispersed
Cre03g0949 Cre-Chr3:8251636 Cre04g1984 Cre-Chr4:37227634 4.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53317 PF02701 zf-Dof 6.20E-32 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0949 - - - 0.0