Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0960 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGGTACGAGCTTGGGAGAATGCTTGGACAAGGCACTTTTGCTAAAGTCTACCATGCTCGTAATCTCAACTCTGGCCAGAGCGTCGCCATTAAAATCATTGACAAAGAGAAAGTGTTACGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTTATGCGCCTTGTCCGACATCCCAATGTGGTGCAGCTTCATGAGGTTATGGCTAGCAGGACCAAAATCTATTTTGCTATGGAGTATGTTAAAGGAGGGGAGCTTTTTAATAAAGTGGCTAAAGGGAAGCTTAAAGAAGATGCTGCTCGTAAGTACTTTCAACAGCTAATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTACCATAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGGTTAAGTGCTTTGGCCGAGTCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTTGAATTTTGATTGCTTTGTTTATTGTGCATTGAGATTATTGACTTTGAAATCATTGATTTGTATGTGCTACGAGATATTGATGAATTTGCATTGGCAATTACTTGTTAAAAAAGGTTATGATGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTTCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCATGATCCAAATTTAATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAGATGCCCTCATTGGTTTCCCCCAGAAGTTCGAAAACTACTCTCAAGAATCCTTGACCCATATCCTCACACTAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAGGGTTTCAAAACAAATGTAGCAACTCCAAAACAACTTCAAATCAATGGAGATGTGTCGTATGTCAGCGATGTTCATTCCGCTTTCGACGACATTAGTTGGGATGAAGGAAGCTCTGTTAGTAACACCAGTGATAGTGGAAAGCCACCAACAGCTAAAGCCCCAATGAGACATAATTCCTTCAATGCATTTGACATCATATCTCTCTCACCAGGTTTTGATCTCTCAGGTTTGTTTGAGAGTGATGCGAATGAGAGGCCACAGTCTCGTTTCACGACCACGAAACCTGCATCGGCGATCGTGTCGAAGTTTGAGGAAATAGCAGAAATGGAAAGGTTCAAAGTGATGAAGAAAGATGGGATTGTTAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGACAATTGGCTATAGATGCTGAAATATTTGAAGTAACACCTTCATTTTTTGTGGTGGAAGTGAAGAAAACTGCTGGAGACACATTGGAATATAGGCAATTTTACAACAAAGACATGAGACCTTGTCTTAAGGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAGCAGCAGCAGCAACAACAACAACCACAATCACAAATTGTTTAG 1527 40.86 MEKKGTILMQRYELGRMLGQGTFAKVYHARNLNSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLHEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGLNFDCFVYCALRLLTLKSLICMCYEILMNLHWQLLVKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPHWFPPEVRKLLSRILDPYPHTRINMAKLMENSWFKKGFKTNVATPKQLQINGDVSYVSDVHSAFDDISWDEGSSVSNTSDSGKPPTAKAPMRHNSFNAFDIISLSPGFDLSGLFESDANERPQSRFTTTKPASAIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGNEQQQQQQQQQQPQSQIV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8448323 8449849 + CrPI670011_03g009600.1 Cre03g0960 492990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0960 508 Pfam Protein kinase domain 223 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0960 508 Pfam Protein kinase domain 12 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0960 508 FunFam Maternal embryonic leucine zipper kinase 2 213 - -
Cre03g0960 508 MobiDBLite consensus disorder prediction 342 362 - -
Cre03g0960 508 Gene3D Transferase(Phosphotransferase) domain 1 3 349 - -
Cre03g0960 508 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cre03g0960 508 ProSiteProfiles Protein kinase domain profile. 12 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0960 508 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 479 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre03g0960 508 ProSiteProfiles NAF domain profile. 362 386 IPR018451 GO:0007165(InterPro)
Cre03g0960 508 Pfam NAF domain 365 423 IPR004041 GO:0007165(InterPro)
Cre03g0960 508 SMART serkin_6 12 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0960 508 CDD CIPK_C 368 482 - -
Cre03g0960 508 FunFam Non-specific serine/threonine protein kinase 362 486 - -
Cre03g0960 508 SUPERFAMILY Protein kinase-like (PK-like) 8 353 IPR011009 -
Cre03g0960 508 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cre03g0960 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0960 508 Gene3D Kinase associated domain 1, KA1 362 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0960 Cre-Chr3:8448323 Cre04g0748 Cre-Chr4:25902013 1.50E-166 dispersed
Cre03g0960 Cre-Chr3:8448323 Cre04g1993 Cre-Chr4:37299559 2.50E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63968 PF00069 Pkinase 6.60E-55 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0960 K07198 - csv:101206082 818.15