Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0973 ATGTCGGAGGCGCCACCGAGACGACTAAGAGGTCACAAAGGCACTGCCACGTGCTGCATCGCCTCGAATGACCGTCCTGGCCTCGTCGCTACTTCAGGCGAGGATGGTTGTGTTTGCTGGTTTGACATGAGATGCAAAGATGTCGTATCCATTATGGAAGTAGGAAAAGAACCCATTTCATCCATATGTTTCAAGCCAGGGAATGAAGATGTTATTTACATCTCGTCTGGGAAGGAAATTAAGTCATTTGATGTCCATCAGGCCACATCATCAAAACCGTTGGGGAGTTATAGTTACAACAAAGAGGAGATAAATCAGGTTTCTTGTAGCTCCAAAGCTTCTTTTCTGGCTGCCGCTGATGATAGTGGCGATGTTAAGATCATTGATATTCACAATAATTGCCTATATAAAACATTAAGATCTGGCCATACAAGTATCTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCCTGGGAAGTTATTACAGGAGGACTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGCCCCATCAAAGTACTTGATTTTGTTTTATCTGATCCTGCTGAGAAGACGTCTGCAAGACACGATATCCCTGCCAACAACCCTTCCAGCAACACGGGACAATGTTTCAATCCTGCATTTGTTCATGCAATAGCAGTTCCTGAAGTTAATATGCTGGACAAAACAGGCCAGATATGTGTCGTTGCAAGGGGGGATGGTATTGTTCATGTGATTGATATTGAATCTGAGAAATTGAAGATTTCCTCAAAAACTGGTAAAAGAACACAAACAAGATCTAAGGGAGTTACAGCGCCTTGTGATATGGATAACCAAACGCAAACTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGGCGTTTTCTCAATTTGGAGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCATAAAGCTTTGGAATTGGTGTGGAGTTCCTGATGCTGGGGAAACTAGCAGCAGCAACAACGATATTCTTCATTTGAACATCAATCTGAGCAAAAAGGTGAACTGGCTTTGTACTACTCCATCTGAATCAGAAAACCTTATCGTTTGTGATACCAGCAAAGTAGTGAAGATCCTTAAGAATAACAATTTTGAGTCTAAGAGTAGGCATTTGCTGAGAATCACCACCAAATATTACCTTCCTGACAAGGTGCAGCACCCTCCTATCTCCAGGAATCAGCATTTCACCTTCATCCAAGCAAAAATTGATCGAAAGAAGAAGATTCAAACTCCAGTGAGAAGCGCACTTCAATTTGAAGATTCACAGACTCTGGAGTTGCTTGCATTTGTGTGGGGTTGCTTTTCCAGTTTCTCCTGTAGCGGTTTGGTTGGTGCACAATCGTCTGTTAGTAGTTCAAATCAAAGACGTGCTCGCCCTAACCAAATCTTTGCTTACACTTCCCGCAAAATTCAAATCTGTTTCTACACACACTTTGCTTCTCATCTCTTCTTCCTCTCCTCTGCAGATGGAATCAGGTGTCCGAAGAAAGGGCAAGTGAGAAACAGGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAACCAGTCGGGGTTGATGGCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAGAGTCTGCGTTCAGTATGATATTAAGGAAGGTCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGAATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCCGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTACTGTGAAGACTGAACAGGAAGCTCAAATACCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGACTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCCCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAACTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATAACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAGTTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCGAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGACCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCAGCAGTCCTCACAAACGCCCCATTCATTCTCAACCTTGACTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATACGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCGGTTTACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTATGGACCTCCTACTCTGCCTAGCTTATCTAAGACGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGGTCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAATCTAAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCCTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATTAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCGTGAGGCCAGCATTCAAAGGATCAGCACCGATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTGTGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTCATTGCCTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTGTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTCGAGCTGCGTTGGAGCGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTGGCTGGCATCGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCTGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTCATTGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATCAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 4533 43.75 MSEAPPRRLRGHKGTATCCIASNDRPGLVATSGEDGCVCWFDMRCKDVVSIMEVGKEPISSICFKPGNEDVIYISSGKEIKSFDVHQATSSKPLGSYSYNKEEINQVSCSSKASFLAAADDSGDVKIIDIHNNCLYKTLRSGHTSICSSVQFLPWRPWEVITGGLDSKLIMWDFSRGRPIKVLDFVLSDPAEKTSARHDIPANNPSSNTGQCFNPAFVHAIAVPEVNMLDKTGQICVVARGDGIVHVIDIESEKLKISSKTGKRTQTRSKGVTAPCDMDNQTQTGRKRLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDKCIKLWNWCGVPDAGETSSSNNDILHLNINLSKKVNWLCTTPSESENLIVCDTSKVVKILKNNNFESKSRHLLRITTKYYLPDKVQHPPISRNQHFTFIQAKIDRKKKIQTPVRSALQFEDSQTLELLAFVWGCFSSFSCSGLVGAQSSVSSSNQRRARPNQIFAYTSRKIQICFYTHFASHLFFLSSADGIRCPKKGQVRNRMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMESHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEETAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTTSSSSCSWCGCCSCCCPSKKVSKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC 1510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8530318 8550315 - CrPI670011_03g009730.1 Cre03g0973 493003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0973 1510 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 931 1073 IPR029044 -
Cre03g0973 1510 Pfam Zinc-binding RING-finger 533 585 IPR027934 -
Cre03g0973 1510 MobiDBLite consensus disorder prediction 645 673 - -
Cre03g0973 1510 SMART WD40_4 132 173 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 SMART WD40_4 45 84 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 SMART WD40_4 288 330 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 SMART WD40_4 2 42 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 SMART WD40_4 90 129 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 330 - -
Cre03g0973 1510 Pfam WD domain, G-beta repeat 7 42 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 Pfam WD domain, G-beta repeat 293 330 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 SUPERFAMILY RING/U-box 523 601 - -
Cre03g0973 1510 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 182 IPR001680 GO:0005515(InterPro)
Cre03g0973 1510 Gene3D - 228 425 IPR015943 GO:0005515(InterPro)
Cre03g0973 1510 MobiDBLite consensus disorder prediction 595 614 - -
Cre03g0973 1510 SUPERFAMILY WD40 repeat-like 5 384 IPR036322 GO:0005515(InterPro)
Cre03g0973 1510 SUPERFAMILY Nucleotide-diphospho-sugar transferases 795 1308 IPR029044 -
Cre03g0973 1510 Gene3D - 2 195 IPR015943 GO:0005515(InterPro)
Cre03g0973 1510 MobiDBLite consensus disorder prediction 262 278 - -
Cre03g0973 1510 Pfam Cellulose synthase 781 1500 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cre03g0973 1510 ProSitePatterns Trp-Asp (WD) repeats signature. 160 174 IPR019775 -
Cre03g0973 1510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 608 IPR013083 -
Cre03g0973 1510 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 701 1477 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cre03g0973 1510 FunFam Cellulose synthase 898 1072 - -
Cre03g0973 1510 MobiDBLite consensus disorder prediction 259 278 - -
Cre03g0973 1510 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 330 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0973 Cre-Chr3:8530318 Cre06g0915 Cre-Chr6:2565054 0.00E+00 dispersed
Cre03g0973 Cre-Chr3:8530318 Cre02g1225 Cre-Chr2:12234652 2.70E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0973 K10999 - csv:101208988 1959.11