Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0976 ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCCCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTGTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACGCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCTTGTGAGCATAATCATTCCGGTCCGGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGCTGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAAGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACGGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTTGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCAGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA 828 49.4 MDDNVTFNNNNHQFFSADQLEDSDESKPPPDSPPPNSAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTAAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8587834 8588857 + CrPI670011_03g009760.1 Cre03g0976 493006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0976 275 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g0976 275 MobiDBLite consensus disorder prediction 135 152 - -
Cre03g0976 275 FunFam WRKY transcription factor 65 58 135 - -
Cre03g0976 275 MobiDBLite consensus disorder prediction 1 17 - -
Cre03g0976 275 SUPERFAMILY WRKY DNA-binding domain 71 134 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g0976 275 SMART WRKY_cls 74 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g0976 275 MobiDBLite consensus disorder prediction 135 159 - -
Cre03g0976 275 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 18 243 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre03g0976 275 Pfam WRKY DNA -binding domain 76 132 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g0976 275 MobiDBLite consensus disorder prediction 60 75 - -
Cre03g0976 275 MobiDBLite consensus disorder prediction 1 78 - -
Cre03g0976 275 Gene3D WRKY domain 63 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0976 Cre-Chr3:8587834 Cre03g1149 Cre-Chr3:11615104 2.10E-29 dispersed
Cre03g0976 Cre-Chr3:8587834 Cre07g0618 Cre-Chr7:3968828 1.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53319 PF03106 WRKY 6.90E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0976 - - - 0.0