Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0979 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAACTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATGTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTCGTTTCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGCAGCAGATTGTCAATCACGAGGGCGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAAAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACCATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTAAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCGTTGGATCGCAGCATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCGAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGCGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTATAA 2148 46.79 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKLFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDERDEALRTRFLSFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEQQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAMILIQQLSVGSQHAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8648408 8650555 + CrPI670011_03g009790.1 Cre03g0979 493009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0979 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Cre03g0979 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Cre03g0979 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0979 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Cre03g0979 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 SMART arm_5 587 627 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Cre03g0979 715 SUPERFAMILY RING/U-box 277 362 - -
Cre03g0979 715 Gene3D - 392 667 IPR011989 -
Cre03g0979 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0979 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Cre03g0979 715 Coils Coil 212 232 - -
Cre03g0979 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cre03g0979 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Cre03g0979 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0979 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0979 Cre-Chr3:8648408 Cre05g2297 Cre-Chr5:34538688 5.30E-45 dispersed
Cre03g1656 Cre-Chr3:32918320 Cre03g0979 Cre-Chr3:8648408 6.10E-11 transposed
Cre04g0745 Cre-Chr4:25737914 Cre03g0979 Cre-Chr3:8648408 1.00E-106 transposed
Cre08g1657 Cre-Chr8:29080466 Cre03g0979 Cre-Chr3:8648408 8.40E-36 transposed
Cre11g1087 Cre-Chr11:8331211 Cre03g0979 Cre-Chr3:8648408 5.10E-93 transposed
Cre03g0979 Cre-Chr3:8648408 Cre05g2512 Cre-Chr5:36519747 1.20E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0979 - - - 0.0