Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0993 ATGAGTTTTGATAATGAAGAGTCAACAGGAGTAGAAAGAAGATCGTCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAAAGAATTGAAAATACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAACGGGTTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACGATTTCGAGGTACAAAAAAGCATGTTCGGATCCCTCCAGCACCGTATCGGTTTCGGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTAAACAGGCATTTGTTGGGAGAATCGATTAGTTCGTTGTCCGTTAAAGATCTGAAAAGCCTGGAGATCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGGAAATTGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACACAAGTGGAAATAATGCAATAGCAGGAAGAGGAAGAGGAGAGCAAGGATCTGTGGCTCCAAATTTAGAGGTTAATCATAATAATCAATATGACCCAACAAATTACTTTCCCCATCATAATCATCATATCTCTCTGCAACTTGTGTGA 741 40.35 MSFDNEESTGVERRSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSSTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELHNNNQLIRAKIAETERSQQNTSGNNAIAGRGRGEQGSVAPNLEVNHNNQYDPTNYFPHHNHHISLQLV 246
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 8745829 8753092 + CrPI670011_03g009930.1 Cre03g0993 493023
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0993 246 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Cre03g0993 246 MobiDBLite consensus disorder prediction 192 206 - -
Cre03g0993 246 Pfam K-box region 102 189 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre03g0993 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre03g0993 246 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 MobiDBLite consensus disorder prediction 192 218 - -
Cre03g0993 246 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 MobiDBLite consensus disorder prediction 7 24 - -
Cre03g0993 246 SUPERFAMILY SRF-like 20 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre03g0993 246 MobiDBLite consensus disorder prediction 1 24 - -
Cre03g0993 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 Gene3D - 31 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre03g0993 246 CDD MADS_MEF2_like 20 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0993 Cre-Chr3:8745829 Cre08g0046 Cre-Chr8:1162935 5.10E-72 dispersed
Cre02g2141 Cre-Chr2:34994301 Cre03g0993 Cre-Chr3:8745829 2.00E-70 wgd
Cre03g0993 Cre-Chr3:8745829 Cre04g2020 Cre-Chr4:37497982 1.50E-79 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53322 PF01486 K-box 1.60E-26 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0993 K09264 - csv:101205366 395.586