Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0996 ATGTTTACAGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATTTGCTGGTGATAGTTGTGGGTCATTTAATGAGGAAGAGCTCTTAGAAGGGATATCAGTGGTAAAAGATATCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGTCTTCTAGTTGTAGCAAACAGGTTACCTGTGTCTGCTGTTAGGAAAGGGAAGGAGGCATGGCATCTCGAAATCAGCGTGGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCTTAGAGAAGGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGGCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCGTCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGATTAGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAATTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCCCTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACTGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGACGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACACAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATCCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCAATTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACTCCTAGATCCCATTTTGAGCTTCGCGAAACTTCACTGGTGTGGAACTACAAACATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCACCTATGGACTGGTCCAATCTCAAATGCATCGGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAGAACAACAGTCGCCAATCCATTCGGAGGAGTACCGGTGCCAAAGATCTCAAACAATGGAGCCCCACCAAGCAGGTCGGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGAAGAGCAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGTGCTGTGGGGCGGAAACGATCCAGTGCTAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAATTGTCAGAATGTTCAGAGTCAAGTTTAAGTTAG 2829 43.3 MFTGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEARDAYSLGEVNSYDLFTFAGDSCGSFNEEELLEGISVVKDIFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKEAWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDPLGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKHADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAARTTVANPFGGVPVPKISNNGAPPSRSARLKKQRSLSILERRANSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSSARYLLGSSDDVVTLVKELSECSESSLS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8794596 8801938 + CrPI670011_03g009960.1 Cre03g0996 493026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0996 942 Coils Coil 26 46 - -
Cre03g0996 942 Gene3D Glycogen Phosphorylase B; 349 551 - -
Cre03g0996 942 CDD HAD_TPP 600 820 - -
Cre03g0996 942 FunFam Alpha,alpha-trehalose-phosphate synthase 626 695 - -
Cre03g0996 942 Gene3D Glycogen Phosphorylase B; 94 348 - -
Cre03g0996 942 SUPERFAMILY HAD-like 601 931 IPR036412 -
Cre03g0996 942 CDD GT20_TPS 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre03g0996 942 Gene3D - 692 772 - -
Cre03g0996 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 349 551 - -
Cre03g0996 942 Pfam Trehalose-phosphatase 625 824 IPR003337 GO:0005992(InterPro)
Cre03g0996 942 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
Cre03g0996 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 97 935 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre03g0996 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 94 348 - -
Cre03g0996 942 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 692 772 - -
Cre03g0996 942 Gene3D - 626 815 IPR023214 -
Cre03g0996 942 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cre03g0996 942 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0996 K16055 - - csv:101213690 1757.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0996 Cre-Chr3:8794596 Cre10g0401 Cre-Chr10:2861517 4.90E-123 dispersed
Cre11g2131 Cre-Chr11:32983854 Cre03g0996 Cre-Chr3:8794596 0.00E+00 transposed
Cre03g0996 Cre-Chr3:8794596 Cre07g0616 Cre-Chr7:3955023 1.20E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g299 Blo01g00884 . . . . . . Bma01g01475 . Cmo18g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g00042 . . . . . . . . . Sed08g2711 . . . Cma18g00443 . Car18g00415 . . Bhi08g02131 Tan05g2550 Cmetu12g0972 Lac10g1001 . . . Cla03g00681 Cam03g0713 Cec03g0686 Cco03g0723 Clacu03g0728 Cmu03g1320 Cre03g0996 Lsi02g00848 Csa01g02281 . Cme12g01248
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g2323 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 1.9e-195 679.5
Cre07g0616 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.2 0.0e+00 1380.2
Cre04g2005 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1091.6
Cre06g2555 . 39 871 Trehalose Biosynthesis Gene Families AT1G06410 59.5 2.9e-300 1028.1
Cre11g2131 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.8e-249 859.0
Cre03g0996 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.1e-241 833.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.3
Cre06g2555 . 38 878 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1204.9
Cre10g0401 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Cre07g0616 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1097.8
Cre04g2005 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.2
Cre06g2555 . 35 872 Trehalose Biosynthesis Gene Families AT1G60140 68.4 0.0e+00 1219.5
Cre10g0401 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.5
Cre07g0616 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.2 2.2e-313 1071.6
Cre04g2005 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.4e-312 1067.4
Cre10g0401 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cre04g2005 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cre07g0616 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1142.9
Cre05g2685 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.2
Cre06g2555 . 42 869 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1091.6
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1192.9
Cre06g2555 . 38 906 Trehalose Biosynthesis Gene Families AT1G70290 62.0 0.0e+00 1088.9
Cre07g0616 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 1.1e-291 999.6
Cre04g2005 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.4e-290 994.6
Cre10g0401 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 3.3e-285 978.0
Cre11g2131 . 1 942 Trehalose Biosynthesis Gene Families AT1G78580 77.9 0.0e+00 1471.4
Cre03g0996 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1360.1
Cre05g2685 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 7.8e-309 1056.6
Cre06g2555 . 41 871 Trehalose Biosynthesis Gene Families AT2G18700 60.0 2.0e-301 1031.9
Cre04g2005 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.8e-298 1021.5
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.8e-298 1021.5
Cre07g0616 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.9e-292 1001.1
Cre10g0401 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1378.6
Cre04g2005 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cre07g0616 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1160.6
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.2
Cre06g2555 . 42 868 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1102.8
Cre11g2131 . 93 942 Trehalose Biosynthesis Gene Families AT4G27550 61.3 8.4e-302 1033.1
Cre03g0996 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.4 5.3e-288 987.3
Cre11g2131 . 1 942 Trehalose Biosynthesis Gene Families AT1G78580 77.9 0.0e+00 1471.4
Cre03g0996 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1360.1
Cre11g2131 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.8e-249 859.0
Cre03g0996 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.1e-241 833.2
Cre11g2131 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.6e-194 676.0
Cre03g0996 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 3.0e-190 662.5
Cre11g2131 . 93 942 Trehalose Biosynthesis Gene Families AT4G27550 61.3 8.4e-302 1033.1
Cre03g0996 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.4 5.3e-288 987.3
Cre10g0401 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1378.6
Cre04g2005 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cre07g0616 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1160.6
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.2
Cre06g2555 . 42 868 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1102.8
Cre10g0401 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cre04g2005 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cre07g0616 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1142.9
Cre05g2685 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.2
Cre06g2555 . 42 869 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1091.6
Cre07g0616 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.2 0.0e+00 1380.2
Cre04g2005 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1091.6
Cre06g2555 . 39 871 Trehalose Biosynthesis Gene Families AT1G06410 59.5 2.9e-300 1028.1
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1192.9
Cre06g2555 . 38 906 Trehalose Biosynthesis Gene Families AT1G70290 62.0 0.0e+00 1088.9
Cre07g0616 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 1.1e-291 999.6
Cre04g2005 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.4e-290 994.6
Cre10g0401 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 3.3e-285 978.0
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.3
Cre06g2555 . 38 878 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1204.9
Cre10g0401 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Cre07g0616 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1097.8
Cre04g2005 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.2
Cre06g2555 . 35 872 Trehalose Biosynthesis Gene Families AT1G60140 68.4 0.0e+00 1219.5
Cre10g0401 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.5
Cre07g0616 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.2 2.2e-313 1071.6
Cre04g2005 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.4e-312 1067.4
Cre05g2685 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 7.8e-309 1056.6
Cre06g2555 . 41 871 Trehalose Biosynthesis Gene Families AT2G18700 60.0 2.0e-301 1031.9
Cre04g2005 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.8e-298 1021.5
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.8e-298 1021.5
Cre07g0616 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.9e-292 1001.1
Cre09g2323 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 1.9e-195 679.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001443 2 5 3 3 2 1 2 2 1 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 1 2 2 6 6 1 71