Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g0999 | ATGGAAGGGCCAAGCCCAAGGCATAAAGATACGCTCAATTCCACAAGTAGTGAAAGGAAAATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATAGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTCGACAGACATGCAAAGAACAAATATTCGCGGACAAAACCTCCGAAGAGCTATCAACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATTAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAAGCACATAGATTACTGTATGCATAGAATAAATCTACTCCGGCACTATGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTATTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTGATTAGACACTTGAGGTACAGCACAGTTTCAGTTCCTCATCTAAGCAGTAACTTAACATATTATACATCGATACCACAACATATAGCTAAAGGTATAGCAGAAGGTGATATCGATCCGTGTACTAATTTACCATTCCAGGAGCAGAATATCAACACCGGAGTCGCGCATGAAAGTCCTTACATATTAAAAGAATTTAACCCTGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTCAGGGATGACACCTCAATTGGTGCCGAGGAGCCAGTTGGTCCTGAAGATAGTTGCTCGCCAGCTTCTACCAATCACGGTGAAAATGTAGAGGGCTGTCCATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGGTTCTTGCAATCAGAGTAAGGATATGGTCAGTAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTGAGGAGTTCTTACTTCAAGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGATGAAACAGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCCGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTCAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACGATGA | 2751 | 42.57 | MEGPSPRHKDTLNSTSSERKMVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRHAKNKYSRTKPPKSYQPCRAMGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNALPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAILTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTVSVPHLSSNLTYYTSIPQHIAKGIAEGDIDPCTNLPFQEQNINTGVAHESPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKQSANQPSFRDDTSIGAEEPVGPEDSCSPASTNHGENVEGCPSTYPVRNDNADGFPLSGSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHDETVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRR | 916 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8830011 | 8839687 | - | CrPI670011_03g009990.1 | Cre03g0999 | 493029 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
Cre03g0999 | 916 | FunFam | Exonuclease 1, putative | 268 | 474 | - | - | |
Cre03g0999 | 916 | SMART | HhH_4 | 480 | 513 | IPR008918 | GO:0003677(InterPro)|GO:0003824(InterPro) | |
Cre03g0999 | 916 | Gene3D | - | 478 | 541 | - | - | |
Cre03g0999 | 916 | FunFam | exonuclease 1 | 476 | 538 | - | - | |
Cre03g0999 | 916 | SUPERFAMILY | eIF4e-like | 76 | 251 | IPR023398 | - | |
Cre03g0999 | 916 | Pfam | XPG N-terminal domain | 268 | 365 | IPR006085 | GO:0004518(InterPro) | |
Cre03g0999 | 916 | Pfam | Eukaryotic initiation factor 4E | 81 | 233 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cre03g0999 | 916 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 268 | 867 | IPR006084 | GO:0017108(PANTHER) | |
Cre03g0999 | 916 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 340 | 359 | IPR006084 | - | |
Cre03g0999 | 916 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 483 | 498 | IPR006084 | - | |
Cre03g0999 | 916 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 425 | 445 | IPR006084 | - | |
Cre03g0999 | 916 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 291 | 305 | IPR006084 | - | |
Cre03g0999 | 916 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 404 | 421 | IPR006084 | - | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 619 | 666 | - | - | |
Cre03g0999 | 916 | Pfam | XPG I-region | 408 | 493 | IPR006086 | GO:0004518(InterPro) | |
Cre03g0999 | 916 | SUPERFAMILY | PIN domain-like | 269 | 493 | IPR029060 | - | |
Cre03g0999 | 916 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 136 | 159 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Cre03g0999 | 916 | FunFam | Eukaryotic translation initiation factor 4E | 71 | 255 | - | - | |
Cre03g0999 | 916 | Gene3D | - | 268 | 474 | - | - | |
Cre03g0999 | 916 | CDD | PIN_EXO1 | 268 | 469 | IPR044752 | GO:0046872(InterPro) | |
Cre03g0999 | 916 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 72 | 255 | IPR023398 | - | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 881 | 897 | - | - | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cre03g0999 | 916 | SMART | xpgineu | 405 | 475 | IPR006086 | GO:0004518(InterPro) | |
Cre03g0999 | 916 | SMART | xpgn3 | 268 | 366 | IPR006085 | GO:0004518(InterPro) | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 881 | 916 | - | - | |
Cre03g0999 | 916 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 479 | 531 | IPR036279 | - | |
Cre03g0999 | 916 | ProSitePatterns | XPG protein signature 1. | 338 | 352 | IPR019974 | GO:0016788(InterPro) | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 743 | 761 | - | - | |
Cre03g0999 | 916 | MobiDBLite | consensus disorder prediction | 743 | 766 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1413 | Cre-Chr1:27376798 | Cre03g0999 | Cre-Chr3:8830011 | 6.60E-61 | dispersed | |
Cre03g0999 | Cre-Chr3:8830011 | Cre06g1494 | Cre-Chr6:9585295 | 3.70E-59 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g0999 | K10746 | - | csv:101214177 | 1152.5 |