Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0999 ATGGAAGGGCCAAGCCCAAGGCATAAAGATACGCTCAATTCCACAAGTAGTGAAAGGAAAATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATAGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTCGACAGACATGCAAAGAACAAATATTCGCGGACAAAACCTCCGAAGAGCTATCAACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATTAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAAGCACATAGATTACTGTATGCATAGAATAAATCTACTCCGGCACTATGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTATTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTGATTAGACACTTGAGGTACAGCACAGTTTCAGTTCCTCATCTAAGCAGTAACTTAACATATTATACATCGATACCACAACATATAGCTAAAGGTATAGCAGAAGGTGATATCGATCCGTGTACTAATTTACCATTCCAGGAGCAGAATATCAACACCGGAGTCGCGCATGAAAGTCCTTACATATTAAAAGAATTTAACCCTGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTCAGGGATGACACCTCAATTGGTGCCGAGGAGCCAGTTGGTCCTGAAGATAGTTGCTCGCCAGCTTCTACCAATCACGGTGAAAATGTAGAGGGCTGTCCATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGGTTCTTGCAATCAGAGTAAGGATATGGTCAGTAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTGAGGAGTTCTTACTTCAAGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGATGAAACAGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCCGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTCAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACGATGA 2751 42.57 MEGPSPRHKDTLNSTSSERKMVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRHAKNKYSRTKPPKSYQPCRAMGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNALPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAILTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTVSVPHLSSNLTYYTSIPQHIAKGIAEGDIDPCTNLPFQEQNINTGVAHESPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKQSANQPSFRDDTSIGAEEPVGPEDSCSPASTNHGENVEGCPSTYPVRNDNADGFPLSGSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHDETVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRR 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8830011 8839687 - CrPI670011_03g009990.1 Cre03g0999 493029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0999 916 MobiDBLite consensus disorder prediction 29 44 - -
Cre03g0999 916 FunFam Exonuclease 1, putative 268 474 - -
Cre03g0999 916 SMART HhH_4 480 513 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cre03g0999 916 Gene3D - 478 541 - -
Cre03g0999 916 FunFam exonuclease 1 476 538 - -
Cre03g0999 916 SUPERFAMILY eIF4e-like 76 251 IPR023398 -
Cre03g0999 916 Pfam XPG N-terminal domain 268 365 IPR006085 GO:0004518(InterPro)
Cre03g0999 916 Pfam Eukaryotic initiation factor 4E 81 233 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cre03g0999 916 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 268 867 IPR006084 GO:0017108(PANTHER)
Cre03g0999 916 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 340 359 IPR006084 -
Cre03g0999 916 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 483 498 IPR006084 -
Cre03g0999 916 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 425 445 IPR006084 -
Cre03g0999 916 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 291 305 IPR006084 -
Cre03g0999 916 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 404 421 IPR006084 -
Cre03g0999 916 MobiDBLite consensus disorder prediction 619 666 - -
Cre03g0999 916 Pfam XPG I-region 408 493 IPR006086 GO:0004518(InterPro)
Cre03g0999 916 SUPERFAMILY PIN domain-like 269 493 IPR029060 -
Cre03g0999 916 ProSitePatterns Eukaryotic initiation factor 4E signature. 136 159 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cre03g0999 916 FunFam Eukaryotic translation initiation factor 4E 71 255 - -
Cre03g0999 916 Gene3D - 268 474 - -
Cre03g0999 916 CDD PIN_EXO1 268 469 IPR044752 GO:0046872(InterPro)
Cre03g0999 916 Gene3D RNA Cap, Translation Initiation Factor Eif4e 72 255 IPR023398 -
Cre03g0999 916 MobiDBLite consensus disorder prediction 881 897 - -
Cre03g0999 916 MobiDBLite consensus disorder prediction 1 56 - -
Cre03g0999 916 MobiDBLite consensus disorder prediction 1 27 - -
Cre03g0999 916 SMART xpgineu 405 475 IPR006086 GO:0004518(InterPro)
Cre03g0999 916 SMART xpgn3 268 366 IPR006085 GO:0004518(InterPro)
Cre03g0999 916 MobiDBLite consensus disorder prediction 881 916 - -
Cre03g0999 916 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 479 531 IPR036279 -
Cre03g0999 916 ProSitePatterns XPG protein signature 1. 338 352 IPR019974 GO:0016788(InterPro)
Cre03g0999 916 MobiDBLite consensus disorder prediction 743 761 - -
Cre03g0999 916 MobiDBLite consensus disorder prediction 743 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1413 Cre-Chr1:27376798 Cre03g0999 Cre-Chr3:8830011 6.60E-61 dispersed
Cre03g0999 Cre-Chr3:8830011 Cre06g1494 Cre-Chr6:9585295 3.70E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0999 K10746 - csv:101214177 1152.5