Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1016 ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGTTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCAGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCCATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATTGATCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACTGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGACTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACCAATCTCGTCGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACAAGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCTCAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCTAAAGCCACAGCCTTTCACAATTAGAACCACAAAGCTTTCTCAAATATTAAGGCTGAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATGATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATTATGGGGAATATTTGGTGTGATAATGGTGAAAAGTTTGGAGGGCAAATGCCTACAAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA 1701 40.33 MRCSYCTKHFFQRFFTDEFQINGGGGSGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCLKPQPFTIRTTKLSQILRLKRTSLLYILQSNTEDGNIMMNNFFMKMKEYERIMGNIWCDNGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9040361 9047488 + CrPI670011_03g010160.1 Cre03g1016 493046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1016 566 Gene3D - 67 307 - -
Cre03g1016 566 Gene3D Jelly Rolls 351 516 IPR014710 -
Cre03g1016 566 FunFam Potassium channel KAT3 68 308 - -
Cre03g1016 566 Pfam KHA, dimerisation domain of potassium ion channel 522 555 IPR021789 -
Cre03g1016 566 Pfam Cyclic nucleotide-binding domain 403 492 IPR000595 -
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 79 86 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1016 566 SMART cnmp_10 384 504 IPR000595 -
Cre03g1016 566 SUPERFAMILY cAMP-binding domain-like 311 503 IPR018490 -
Cre03g1016 566 CDD CAP_ED 384 500 IPR000595 -
Cre03g1016 566 ProSiteProfiles KHA domain profile. 482 566 IPR021789 -
Cre03g1016 566 SUPERFAMILY Voltage-gated potassium channels 61 307 - -
Cre03g1016 566 PANTHER POTASSIUM CHANNEL AKT1 17 511 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cre03g1016 566 ProSiteProfiles cAMP/cGMP binding motif profile. 384 506 IPR000595 -
Cre03g1016 566 FunFam Potassium channel KAT2 372 511 - -
Cre03g1016 566 Pfam Ion transport protein 66 313 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1016 Cre-Chr3:9040361 Cre06g1932 Cre-Chr6:26481846 1.20E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1016 K21867 - csv:101215858 983.786