Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1069 ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCCGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCGACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATGCGGGTAGTCTCGTTGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAACTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTCGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGATCCTTGAAGTTTGGCTCATCAGTTAGTACTACAAATTTGGTCGATGGTGCGAATGGGGGTTGCTTCTTGGAAGTCTATGATATGCAATTTGCTCTTAGGAATATGCATGACCCTGATGTGCTTCTTTTAGTGTTGGTGCATATTGGCCAATTTGCATCAAAGAAAGCCTAA 1563 42.67 MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDAGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSRSLKFGSSVSTTNLVDGANGGCFLEVYDMQFALRNMHDPDVLLLVLVHIGQFASKKA 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9780132 9789699 + CrPI670011_03g010690.1 Cre03g1069 493099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1069 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1069 520 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1069 520 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Cre03g1069 520 CDD STKc_SnRK3 23 278 - -
Cre03g1069 520 CDD CIPK_C 327 442 - -
Cre03g1069 520 FunFam Non-specific serine/threonine protein kinase 17 321 - -
Cre03g1069 520 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Cre03g1069 520 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Cre03g1069 520 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1069 520 Gene3D Kinase associated domain 1, KA1 320 446 - -
Cre03g1069 520 MobiDBLite consensus disorder prediction 1 23 - -
Cre03g1069 520 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Cre03g1069 520 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1069 520 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cre03g1069 520 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Cre03g1069 520 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Cre03g1069 520 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre03g1069 520 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2715 Cre-Chr2:40328992 Cre03g1069 Cre-Chr3:9780132 2.30E-182 dispersed
Cre03g1069 Cre-Chr3:9780132 Cre05g0117 Cre-Chr5:1347709 1.50E-174 dispersed
Cre10g2255 Cre-Chr10:36902024 Cre03g1069 Cre-Chr3:9780132 1.60E-42 transposed
Cre03g1069 Cre-Chr3:9780132 Cre04g2087 Cre-Chr4:38082320 6.30E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63974 PF00069 Pkinase 1.00E-74 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1069 - - - 0.0