Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1075 ATGAGGCTCTCTGCAGGTGGTTTTAGTCCTCAGGCTCAGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCTAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAATCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGAACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACGGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACACGATAATGAGTGGAAATTTAGACACATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAATCAATTACTCCTCGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACCATCAGCCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCTCTGACCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCCCATTGGCGCTCGGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAACGGCAGCCAAGAGTTTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGATTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAGTCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCCGTTCTGCAATTCCAGCAGCCCCAAGGTCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAACAATCGTTCAATAATCAACAACAGCAGCATCAACAGCAAGCAAGGCAGGCACAGCCACTAGATCATCAGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCGTGTTCTCAATCCCAGTCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAGGTTTTTCTGATTCCAACGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCAGCCCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTGTACTGGAGCTGCTCAATATTTTCTACCTCAAGTGGAAATTTTGGGAACACCACAGGGTAGTATTTCTCAGAATACTGTTGCATTGCCACCTTTCCCCGGAAGGGAGTGTCCTATTGATGACCGAGATGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAATCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGACGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTCGGCGATGGCCCATGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCGATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATTTCAGGGATAACCTCTGTCGGGGCTCTTGACTACTGA 2709 47.47 MRLSAGGFSPQAQEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQTQSHHLQPQLQPQQSFNNQQQQHQQQARQAQPLDHQQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPGFSDSNGNPVTSPTVSPLHSLAGSFVQDDSAQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGAAQYFLPQVEILGTPQGSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGALDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9915849 9921234 - CrPI670011_03g010750.1 Cre03g1075 493105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1075 902 Gene3D - 291 363 - -
Cre03g1075 902 ProSiteProfiles PB1 domain profile. 769 853 IPR053793 -
Cre03g1075 902 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre03g1075 902 FunFam Auxin response factor 291 363 - -
Cre03g1075 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 860 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre03g1075 902 MobiDBLite consensus disorder prediction 483 546 - -
Cre03g1075 902 FunFam Auxin response factor 765 858 - -
Cre03g1075 902 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Cre03g1075 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Cre03g1075 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cre03g1075 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
Cre03g1075 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cre03g1075 902 Gene3D - 125 228 IPR015300 -
Cre03g1075 902 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cre03g1075 902 FunFam Auxin response factor 125 229 - -
Cre03g1075 902 Pfam AUX/IAA family 763 858 IPR033389 -
Cre03g1075 902 Gene3D - 767 858 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1075 Cre-Chr3:9915849 Cre05g2020 Cre-Chr5:32216306 9.30E-172 dispersed
Cre03g1075 Cre-Chr3:9915849 Cre04g2093 Cre-Chr4:38145730 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53328 PF02309 AUX_IAA 3.20E-07 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1075 K14486 - csv:101211705 1654.8