Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1096 | ATGGATAATGGTGATATTGAGAGCGGGGAAGAGGAATTTCATGGGCAGAGGGGTAGGAAGTATCGCCCTGTCGAAGCCCATGATCGTGCTGTTCTTGAAATGTCTTCCATGGATCCGGGTTCCTCATCTTCTTCCTCCTCCATTCCCCCCTTGCGCCAACCTTCTCTCAAGAAGGTAAAAGTGGGTTCTCAGACCGGCACTGAAAAAGAAGGGAACTCTCCTACTCGTATTGAAGTCAATGGCCCGCAGCGAGAATCCAAACTGGAGTTTTTTGGTTTTGATTCTCTTGTTAATATTCTTGGCCTTAAGAGTATGATGGGCGAACAAATTCAAGCGCCTTCTAGTCCTCGAGATGGTGAGAATGTTTCTATCACTCAGGGGTTGCCAAAGACCAATGAAGTCAAATCGGGTACATTGATGGGTGTATTTATCCCATGCTTGCAGAACATATTGGGAATCATTTACTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCGTTTTGTGGTTTATGTACGTTCTTGACTTCGATTTCACTAAGTGCTATTGCAACTAATGGAGCTATGAAGGGTGGGGGTCCATATTATTTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTCGGAAATGCAGTTGCTGGTGCGCTTTATGTGTTGGGAGCTGTAGAAACATTTTTGAATGCTGTCCCAGCTGCAGGGATTTTCAGAGAGACTGTAACAAAAGTGAACGGAACAACTGTTGCAGAGCCAATACAAAGCCCAAGTTCACATGACTTGCAAGTTTATGGCATTATTGTGACGATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCAGTACTTTGCATATTTCTTGGAATTTTTCTGGCAAGGAAAAACGACCCAGCAGAGGGCGTCACAGGTTTGAGTTTGGAATCTTTTAAAGAAAATTGGAGTTCTGATTATCAGATGACTAATAGTGCTGGAATTCCTGATCCTTTTGGAAAAGTATACTGGAATTTCAATGCTTTGGTTGGTCTTTTTTTCCCTGCTGTGACGGGAATAATGGCTGGTTCTAATAGATCGGCTTCACTGAAGGATACTCAGCGTTCAATTCCTATTGGAACATTGGCTGCAACTCTAACAACAACTGCATTGTATCTGATCTCTGTTTTGCTGTTTGGAGCACTGGCAACCAGAGAGAAATTGTTGACAGATAGGCTTCTTACTGCTACGGTTGCTTGGCCTTTCCCAGCAATTATTTACGTTGGAATTATTTTATCAACCCTTGGAGCTGCCCTTCAGAGCCTGACAGGAGCCCCTCGCTTACTAGCAGCCATAGCCAATGATGATATATTGCCTATTCTAAACTATTTTAAAGTAGCAGATGGCAGTGAGCCATACTTTGCAACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCATTATTGGGAATCTTGATCTTATCACACCAACTGTAACCATGTTTTTCCTACTGTGCTATGCTGGTGTGAACTTATCCTGCTTCCTTTTGGATCTACTAGACGCTCCCAGTTGGCGTCCACGCTGGAGATTCCACCACTGGAGCCTTTCTCTTCTTGGAGCATCACTTTGTGTAGTGATAATGTTCTTGATCTCGTGGTCATTCACGATAGTGTCTCTAGCCCTTGCAAGCCTTATATACTATTATGTGTGCCTTAGAGGCAAGGCTGGAGACTGGGGTGATGGTTTCAAGAGTGCATATTTCCAACTTGCTCTCCGTAGTCTTCGTTCGCTTGGAGCGAGCCAAGTCCACCCAAAGAATTGGTATCCCATTCCCTTGATATTTTGCCGGCCATGGGGAAAGCTGCCCGAAAATGTACCATGTCACCCTAAACTTGCAGACTTTGCAAACTGCATGAAGAAAAAAGGCCGGGGAATGTCCATATTTGTCTCCATACTAGATGGAGATTACCATGAACGGGTTGAAGATGCAAAAGCTGCCTGCAAGCAGCTTGCTACATATATCGATTACAAACGTTGTGAAGGTGTGGCAGAGATTGTTGTGGCTCCCACAATGTCTGAAGGTTTCCGGGGGATCGTCCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTGTAGTCATGCGATACCCTGAAATATGGCGTCGTGAAAACCTAATAGAAATTCCAGCTACTTTTGTTGGAATAATCAATGACTGCATTGATGCCAACAAGGCAGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTTCAAAGGCAATATGGAACTATAGACTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAGAGTTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCTGACGCGGAGGGCCTCAAAGCTGATGTCAAAAAGTTTTTGTATGATCTTCGGATGCAAGCTGAGGTGATTGTTATAACAATAAAATCATGGGACACACAAGTGGAGGGCGCGCAACCAGACGAATCAATGGAAGCCTTCAGCGCTGCTCAAGGGAGGATTGCTAGTTATTTAAGTGAAATGAAGGCAACAGCTGAGAGCAGAGGAACCACACTCATGGCTGATGGGAAGCCTGTGAGTGTGAATGAGCAGCAGGTTGAGAAGTTTCTAAATACAACTCTCAAGTTGAACTCAACGATTCTAAGATACTCCAGGATGGCTGCGGTTGTGCTCGTCAGCCTCCCGCCACCCCCTGTCAACCATCCCGCTTACTTCTATATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGTCGAGATGTCGTAACTTTGTTCACCTAG | 2949 | 44.59 | MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGSSSSSSSIPPLRQPSLKKVKVGSQTGTEKEGNSPTRIEVNGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAPSSPRDGENVSITQGLPKTNEVKSGTLMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKVNGTTVAEPIQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSVLCIFLGIFLARKNDPAEGVTGLSLESFKENWSSDYQMTNSAGIPDPFGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYLISVLLFGALATREKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPYFATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWRFHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDAKAACKQLATYIDYKRCEGVAEIVVAPTMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVITIKSWDTQVEGAQPDESMEAFSAAQGRIASYLSEMKATAESRGTTLMADGKPVSVNEQQVEKFLNTTLKLNSTILRYSRMAAVVLVSLPPPPVNHPAYFYMEYLDLLVENVPRLLIVRGYRRDVVTLFT | 982 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10338265 | 10351363 | + | CrPI670011_03g010960.1 | Cre03g1096 | 493126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1096 | 982 | Gene3D | Amino acid/polyamine transporter I | 134 | 599 | - | - | |
| Cre03g1096 | 982 | MobiDBLite | consensus disorder prediction | 8 | 32 | - | - | |
| Cre03g1096 | 982 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Cre03g1096 | 982 | FunFam | Cation-chloride cotransporter 1 | 135 | 599 | - | - | |
| Cre03g1096 | 982 | MobiDBLite | consensus disorder prediction | 36 | 80 | - | - | |
| Cre03g1096 | 982 | NCBIfam | K-Cl cotransporter | 68 | 982 | IPR004842 | GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro) | |
| Cre03g1096 | 982 | PANTHER | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 97 | 981 | IPR004842 | GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER) | |
| Cre03g1096 | 982 | Pfam | Solute carrier family 12 | 781 | 981 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cre03g1096 | 982 | Pfam | Solute carrier family 12 | 651 | 772 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cre03g1096 | 982 | Pfam | Amino acid permease | 141 | 609 | IPR004841 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1096 | K14427 | - | csv:101216218 | 1858.57 |