Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1099 ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACGCAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGCTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATATTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCCATGGCTATTGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTCGAAACTACCCTAGTTGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGCCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTGTTAACTGGTCCTTTATGTGA 2535 46.63 MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDITNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10405006 10411873 + CrPI670011_03g010990.1 Cre03g1099 493129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1099 844 MobiDBLite consensus disorder prediction 126 156 - -
Cre03g1099 844 Gene3D - 185 377 IPR023393 -
Cre03g1099 844 Gene3D - 10 84 - -
Cre03g1099 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cre03g1099 844 Coils Coil 87 107 - -
Cre03g1099 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Cre03g1099 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Cre03g1099 844 Pfam MEKHLA domain 699 843 IPR013978 -
Cre03g1099 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cre03g1099 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cre03g1099 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cre03g1099 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cre03g1099 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Cre03g1099 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
Cre03g1099 844 CDD bZIP 70 109 - -
Cre03g1099 844 SUPERFAMILY Bet v1-like 166 376 - -
Cre03g1099 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2424 Cre-Chr2:37600869 Cre03g1099 Cre-Chr3:10405006 0.00E+00 dispersed
Cre03g1099 Cre-Chr3:10405006 Cre09g0009 Cre-Chr9:409823 0.00E+00 dispersed
Cre03g1099 Cre-Chr3:10405006 Cre04g2117 Cre-Chr4:38417369 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53329 PF01852 START 6.50E-50 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1099 K09338 - csv:101211318 1611.66