Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g1100 | ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCGTTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATCTCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCAATGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGACAACAGTGCTGTCGTCATCGTCGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA | 999 | 41.44 | MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFVRSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEMFENMQIGKWLKSDDNALIDNSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10416310 | 10419300 | + | CrPI670011_03g011000.1 | Cre03g1100 | 493130 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g1100 | 332 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 176 | 327 | IPR035892 | - | |
Cre03g1100 | 332 | CDD | C2_ArfGAP | 176 | 319 | - | - | |
Cre03g1100 | 332 | Gene3D | C2 domain | 173 | 332 | IPR035892 | - | |
Cre03g1100 | 332 | ProSiteProfiles | C2 domain profile. | 159 | 275 | IPR000008 | - | |
Cre03g1100 | 332 | Pfam | C2 domain | 176 | 263 | IPR000008 | - | |
Cre03g1100 | 332 | CDD | ArfGap | 18 | 124 | - | - | |
Cre03g1100 | 332 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 174 | 332 | - | - | |
Cre03g1100 | 332 | SMART | C2_3c | 177 | 272 | IPR000008 | - | |
Cre03g1100 | 332 | FunFam | Arf-GAP with dual PH domain-containing protein 1 | 10 | 138 | - | - | |
Cre03g1100 | 332 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Cre03g1100 | 332 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096(InterPro) | |
Cre03g1100 | 332 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 10 | 332 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Cre03g1100 | 332 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096(InterPro) | |
Cre03g1100 | 332 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096(InterPro) | |
Cre03g1100 | 332 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096(InterPro) | |
Cre03g1100 | 332 | Gene3D | Arf GTPase activating protein | 4 | 135 | IPR038508 | - | |
Cre03g1100 | 332 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 146 | IPR001164 | GO:0005096(InterPro) | |
Cre03g1100 | 332 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1100 | Cre-Chr3:10416310 | Cre09g1758 | Cre-Chr9:35942877 | 2.50E-90 | dispersed | |
Cre07g1058 | Cre-Chr7:15760320 | Cre03g1100 | Cre-Chr3:10416310 | 4.50E-19 | transposed | |
Cre07g1552 | Cre-Chr7:30925742 | Cre03g1100 | Cre-Chr3:10416310 | 3.20E-17 | transposed | |
Cre03g1100 | Cre-Chr3:10416310 | Cre04g2119 | Cre-Chr4:38444297 | 1.00E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g1100 | K12486 | - | csv:101211569 | 588.956 |