Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1100 ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCGTTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATCTCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCAATGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGACAACAGTGCTGTCGTCATCGTCGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 999 41.44 MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFVRSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEMFENMQIGKWLKSDDNALIDNSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10416310 10419300 + CrPI670011_03g011000.1 Cre03g1100 493130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1100 332 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 327 IPR035892 -
Cre03g1100 332 CDD C2_ArfGAP 176 319 - -
Cre03g1100 332 Gene3D C2 domain 173 332 IPR035892 -
Cre03g1100 332 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Cre03g1100 332 Pfam C2 domain 176 263 IPR000008 -
Cre03g1100 332 CDD ArfGap 18 124 - -
Cre03g1100 332 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 174 332 - -
Cre03g1100 332 SMART C2_3c 177 272 IPR000008 -
Cre03g1100 332 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cre03g1100 332 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cre03g1100 332 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cre03g1100 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 332 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cre03g1100 332 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cre03g1100 332 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cre03g1100 332 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cre03g1100 332 Gene3D Arf GTPase activating protein 4 135 IPR038508 -
Cre03g1100 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096(InterPro)
Cre03g1100 332 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1100 Cre-Chr3:10416310 Cre09g1758 Cre-Chr9:35942877 2.50E-90 dispersed
Cre07g1058 Cre-Chr7:15760320 Cre03g1100 Cre-Chr3:10416310 4.50E-19 transposed
Cre07g1552 Cre-Chr7:30925742 Cre03g1100 Cre-Chr3:10416310 3.20E-17 transposed
Cre03g1100 Cre-Chr3:10416310 Cre04g2119 Cre-Chr4:38444297 1.00E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1100 K12486 - csv:101211569 588.956