Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1104 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTCTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTAGAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCTCTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCGACCCCGGTGAGATATCCAAGCTTTCGGTTCAATTGGCGCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTGATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCGGAAGTTGATCCGGCTTTGGCGAACCTCATTGCAAATTACTTGAAGAACTCCACCGAATTGACTAGCAATGGTCTTGCCATTCTCTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGAGTTATGATAATCGCCAAAGCAACGGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTCGTAGCGGTAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTAAGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAACTGGCAGCCTTAATTTCATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCGAGCAAACACCAGGCGGTCGCCCTGATGTCGACATCCGACCAATCAATCTTCTACCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAGTTCTACCGTGAATGCAACGTTTACGGCACAGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGCACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCAGTACAAGGCTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCATGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAAAAGAGTGAAATGGAAGGGTGTGAAGAACATTAGCATTAAAACTGCCAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.78 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVLLVGVVVGVVFGTRNASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLDPGEISKLSVQLALDELSRVANYIFDHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMSYDNRQSNGDWVRPILRKLAQTDIRKQANIVVAVDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVKKNKWNVVMVGDGMNATTVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10553346 10555304 + CrPI670011_03g011040.1 Cre03g1104 493134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1104 567 NCBIfam pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857(InterPro)
Cre03g1104 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Cre03g1104 567 FunFam Pectinesterase 66 220 - -
Cre03g1104 567 FunFam Pectinesterase 255 567 - -
Cre03g1104 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cre03g1104 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre03g1104 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Cre03g1104 567 Gene3D - 256 567 IPR012334 -
Cre03g1104 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cre03g1104 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Cre03g1104 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cre03g1104 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre03g1104 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cre03g1104 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1104 Cre-Chr3:10553346 Cre07g1789 Cre-Chr7:33328082 7.00E-125 dispersed
Cre03g1104 Cre-Chr3:10553346 Cre05g0766 Cre-Chr5:6754181 5.80E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1104 - - - 0.0