Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1106 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGAATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATTAAACACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTAGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAAGATAGATCTGATCGCGAACTCGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTGCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTATAAAAGAACAACAGAATTTCGCAGATTGTGTGAAATTATCAGAAATCATCTTGCCAACCTCAACAAGTACAGAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACCGAGATCTTCTGGATATCCAATAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCTTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGCTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTCAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCGCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAGTATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATACGTTCCGGCTCTTGAGAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTCATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTTGCTGAATCCTTAAATAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAAGGCATCAAAAACAAGTGATATATTGCCTGATTTGGCTGATATTGTTGATAAGGAGCATAAGAGGCTGCTTGCTCGTAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTAAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATACGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTACAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGACTCCGAAAAGTTGACGAAACAAACTCTAATGCAATTGGCCCTTACTGAACAATTGAGGGAGAGGCAGGAAATGGAGAAGAAACTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGATGCTGCATTTCAGCAGCGATTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGCTAGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGATGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTGGTCTTCGCCAAGAGGAATTCAGCAGGCGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTGCGCGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAACTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCTGCTGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATATGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCAACACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATCGTGGTCCTCATCCCGAGTTCCTACTCGTGCTAGCACGGACCGCTGA 2922 43.98 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVSFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVMKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIDAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMMESKKIFQERVIGLRQEEFSRRRAEREEQIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPTPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRSSWSSSRVPTRASTDR 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10613532 10623559 + CrPI670011_03g011060.1 Cre03g1106 493136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1106 973 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Cre03g1106 973 Coils Coil 603 649 - -
Cre03g1106 973 Coils Coil 774 794 - -
Cre03g1106 973 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Cre03g1106 973 Coils Coil 93 120 - -
Cre03g1106 973 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cre03g1106 973 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Cre03g1106 973 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852(InterPro)
Cre03g1106 973 Gene3D UVR domain 217 268 - -
Cre03g1106 973 MobiDBLite consensus disorder prediction 814 973 - -
Cre03g1106 973 MobiDBLite consensus disorder prediction 916 939 - -
Cre03g1106 973 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 964 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cre03g1106 973 Pfam PCI domain 438 509 IPR000717 -
Cre03g1106 973 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Cre03g1106 973 Gene3D - 363 494 - -
Cre03g1106 973 Gene3D - 269 343 - -
Cre03g1106 973 Coils Coil 799 858 - -
Cre03g1106 973 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Cre03g1106 973 MobiDBLite consensus disorder prediction 814 861 - -
Cre03g1106 973 Coils Coil 561 600 - -
Cre03g1106 973 Coils Coil 669 699 - -
Cre03g1106 973 MobiDBLite consensus disorder prediction 953 973 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1106 Cre-Chr3:10613532 Cre03g2021 Cre-Chr3:37191140 0.00E+00 dispersed
Cre03g1106 Cre-Chr3:10613532 Cre03g1107 Cre-Chr3:10644794 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1106 K03254 - csv:101209344 1558.5