Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1107 ATGGAGCAGCCGTTTTTCAATCAGTCTCCACCGTCGGTCTCTCTCTCGCAATCAGTCTCCACCGTCGTTTCTCTCTTCTCCGACTTTCCATTCTCCGTGGTCGGTGTCTTAGTCGCTCTCTCTCTCACAACCAGTCTTCCCGTTTCCGTCGTCGAAGGTCTTTCGTGGAACTTCTGTTCGCAAGTCATTCAGCGTTGCATGCTGTCCTTGGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAGCCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTAGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTCGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTTTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATCCATGGTTTGATGTGCATGGTGAAGAAGACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGGACAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTTTTCCCTCTTGATCTGGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAGTTGTCTCAATATGTTCCAGCTCTTGAAAAACTTACTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACAATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAGATATTAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCACTCAAAGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCACTCTTGCAGAATCCTTAAACAAATCAAGAGATATGATCTATCCTCCAGTTAGGAAAGCCTCGAAAACAGGTGATATGTTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTGGCCCTTACTGAACAATTAAGGGAGAGACAAGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATCCATGAACGTCATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGAGAGAGAAGAACATATCAGGCAAATAATTCAGGCCCGGAAAGCGGAAAGGGAGGCTAAGAGGAAGAAAATATTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCTGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGATGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATATGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGTGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATCGTGGTCCTCATCCCGAGTTCCTGCTCGTACCAGCACGGACCGCTGA 3105 43.77 MEQPFFNQSPPSVSLSQSVSTVVSLFSDFPFSVVGVLVALSLTTSLPVSVVEGLSWNFCSQVIQRCMLSLENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLTTLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSKNIVLFGNLGIESDGLRDHLTTLAESLNKSRDMIYPPVRKASKTGDMLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERHQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFSRRRAEREEHIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELDEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWCSDDRRPAFGSSRSSWSSSRVPARTSTDR 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10644794 10654164 - CrPI670011_03g011070.1 Cre03g1107 493137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1107 1034 Coils Coil 624 663 - -
Cre03g1107 1034 Coils Coil 862 921 - -
Cre03g1107 1034 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 66 997 IPR027512 GO:0005852(InterPro)
Cre03g1107 1034 MobiDBLite consensus disorder prediction 877 1034 - -
Cre03g1107 1034 Coils Coil 67 87 - -
Cre03g1107 1034 Gene3D - 332 406 - -
Cre03g1107 1034 Gene3D - 426 557 - -
Cre03g1107 1034 Pfam eIF3a, PCI domain, TPR-like region 71 470 IPR054711 -
Cre03g1107 1034 MobiDBLite consensus disorder prediction 1013 1034 - -
Cre03g1107 1034 Coils Coil 795 815 - -
Cre03g1107 1034 Pfam PCI domain 501 571 IPR000717 -
Cre03g1107 1034 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 71 1025 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cre03g1107 1034 FunFam Eukaryotic translation initiation factor 3 subunit A 280 331 - -
Cre03g1107 1034 FunFam Eukaryotic translation initiation factor 3 subunit A 415 557 - -
Cre03g1107 1034 Coils Coil 156 183 - -
Cre03g1107 1034 Coils Coil 666 712 - -
Cre03g1107 1034 Gene3D UVR domain 280 331 - -
Cre03g1107 1034 Coils Coil 732 762 - -
Cre03g1107 1034 FunFam Eukaryotic translation initiation factor 3 subunit A 331 405 - -
Cre03g1107 1034 Coils Coil 837 857 - -
Cre03g1107 1034 ProSiteProfiles PCI domain profile. 379 576 IPR000717 -
Cre03g1107 1034 MobiDBLite consensus disorder prediction 877 924 - -
Cre03g1107 1034 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 504 595 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1107 Cre-Chr3:10644794 Cre03g2021 Cre-Chr3:37191140 0.00E+00 dispersed
Cre03g1106 Cre-Chr3:10613532 Cre03g1107 Cre-Chr3:10644794 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1107 K03254 - csv:101215735 1556.19