Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1149 ATGTTCTGTAGTTTGTTTGAGATGGACAATAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGACGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGTCTCTGGCCTCACCTAACCGCCGATGAATCATCAATGAATTTTGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCCTTCAATTTAGCTTCTGACGGCGGCGGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTCCGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGCCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGTCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGCGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCATCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAAAAAAAGCAATAGCAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTCCCTTATGACTTAATTTTCACTGAATTTGCTGACCATGACAATGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACAATATGTTGTTGTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1230 48.86 MFCSLFEMDNNYQQAGDLTDVIRLSSAAVDGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDGGGEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSPCSASACSGGVVLPTGASNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTIPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTKKAIATTTNDHQEDGDHQNFPYDLIFTEFADHDNDHDHHHLSADPLNNNMLLFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11615104 11618818 + CrPI670011_03g011490.1 Cre03g1149 493179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1149 409 Gene3D WRKY domain 177 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g1149 409 MobiDBLite consensus disorder prediction 261 289 - -
Cre03g1149 409 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g1149 409 MobiDBLite consensus disorder prediction 261 314 - -
Cre03g1149 409 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 73 358 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre03g1149 409 SMART WRKY_cls 204 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g1149 409 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre03g1149 409 FunFam probable WRKY transcription factor 14 177 258 - -
Cre03g1149 409 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0976 Cre-Chr3:8587834 Cre03g1149 Cre-Chr3:11615104 2.10E-29 dispersed
Cre03g1149 Cre-Chr3:11615104 Cre04g2145 Cre-Chr4:38593984 8.80E-53 dispersed
Cre03g1149 Cre-Chr3:11615104 Cre05g0206 Cre-Chr5:2000037 3.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53332 PF03106 WRKY 4.20E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1149 - - - 0.0