Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1154 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGCTGTGGCCGCAGGGTTGTCAAAGGAGAGCGTTCTTCGATGTCGAGTGGGAAAGTGAAGATGTGGCAGGAGGAGGAGAAGAAAGACGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTCAAGCCTCGGAGATGGCGGATGTGGCTTTGAAGCTTGAACAGCTTGAGATGATGATGGGAGCTGCTCAGGAAGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCCGCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAACCCTCCCCCTCAATCTTCTCCGTATTCCAATTCTCACCACAGGATTCAATCCACCACATCGTGTTTATACGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCAGTTTTGCCTCCTAAAGATTCCTCCACACAAACTGAAACTAATTCTCGTAAGCGATTGAAGGTTGAAGGAGATATCGGTTCGGTGAATTTGTTACCGTCGCCGTCGTCTTCTTCACCGCCGTTTGTTGCTACGGCGGGGATTGTCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAACATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACGGAATCTATTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCTATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCAGATAATACGGCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAGTTGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTGTGTAGTAGTCTAGCGGATCTCGACCCGGCGGCTCTGGAGATTCGACCGACGGCGGTGGAGGCGGTGGCGGTAAACTCAGTGTTCGATCTGCACCGCTTGTTGGCTCGGCCTGGAGCGATAGAAAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGGTTTTCCTGGACCGGTTTACTGAGGCGCTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTCGTCGACCGGGTTGGAACCGGCAAGTGAAGACGTGTTGCTGTCCGAGGTTTATTTGGGTAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTTGAGAGGCACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCGGCTGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGTATGCTTTTGGCCCTCTTTGCTGGTGGAGAAGGGTACAGGGTGGAGGAGAATAATGGTTGTTTAATGCTAGGCTGGCACACTAGACCGTTGATTGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1800 51.61 MKRELEDDRSTAGCGRRVVKGERSSMSSGKVKMWQEEEKKDGGGGGMDELLAVLGYKVQASEMADVALKLEQLEMMMGAAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTTSCLYDDDSEYDLSAIPGVAVLPPKDSSTQTETNSRKRLKVEGDIGSVNLLPSPSSSSPPFVATAGIVSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSTGLEPASEDVLLSEVYLGRQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11782839 11784638 + CrPI670011_03g011540.1 Cre03g1154 493184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1154 599 Pfam GRAS domain family 226 592 IPR005202 -
Cre03g1154 599 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 591 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cre03g1154 599 MobiDBLite consensus disorder prediction 1 43 - -
Cre03g1154 599 MobiDBLite consensus disorder prediction 1 16 - -
Cre03g1154 599 Pfam Transcriptional regulator DELLA protein N terminal 48 115 IPR021914 -
Cre03g1154 599 Coils Coil 63 83 - -
Cre03g1154 599 SMART DELLA_2 48 121 - -
Cre03g1154 599 Gene3D - 46 111 IPR038088 -
Cre03g1154 599 ProSiteProfiles GRAS family profile. 217 592 IPR005202 -
Cre03g1154 599 FunFam DELLA protein GAI 46 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1154 Cre-Chr3:11782839 Cre09g1895 Cre-Chr9:37683600 3.70E-193 dispersed
Cre03g1154 Cre-Chr3:11782839 Cre04g1560 Cre-Chr4:34204842 2.30E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53333 PF03514 GRAS 4.50E-135 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1154 K14494 - csv:101213911 1043.49