Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1154 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGCTGTGGCCGCAGGGTTGTCAAAGGAGAGCGTTCTTCGATGTCGAGTGGGAAAGTGAAGATGTGGCAGGAGGAGGAGAAGAAAGACGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTCAAGCCTCGGAGATGGCGGATGTGGCTTTGAAGCTTGAACAGCTTGAGATGATGATGGGAGCTGCTCAGGAAGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCCGCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAACCCTCCCCCTCAATCTTCTCCGTATTCCAATTCTCACCACAGGATTCAATCCACCACATCGTGTTTATACGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCAGTTTTGCCTCCTAAAGATTCCTCCACACAAACTGAAACTAATTCTCGTAAGCGATTGAAGGTTGAAGGAGATATCGGTTCGGTGAATTTGTTACCGTCGCCGTCGTCTTCTTCACCGCCGTTTGTTGCTACGGCGGGGATTGTCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAACATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACGGAATCTATTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCTATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCAGATAATACGGCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAGTTGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTGTGTAGTAGTCTAGCGGATCTCGACCCGGCGGCTCTGGAGATTCGACCGACGGCGGTGGAGGCGGTGGCGGTAAACTCAGTGTTCGATCTGCACCGCTTGTTGGCTCGGCCTGGAGCGATAGAAAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGGTTTTCCTGGACCGGTTTACTGAGGCGCTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTCGTCGACCGGGTTGGAACCGGCAAGTGAAGACGTGTTGCTGTCCGAGGTTTATTTGGGTAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTTGAGAGGCACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCGGCTGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGTATGCTTTTGGCCCTCTTTGCTGGTGGAGAAGGGTACAGGGTGGAGGAGAATAATGGTTGTTTAATGCTAGGCTGGCACACTAGACCGTTGATTGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1800 51.61 MKRELEDDRSTAGCGRRVVKGERSSMSSGKVKMWQEEEKKDGGGGGMDELLAVLGYKVQASEMADVALKLEQLEMMMGAAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTTSCLYDDDSEYDLSAIPGVAVLPPKDSSTQTETNSRKRLKVEGDIGSVNLLPSPSSSSPPFVATAGIVSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSTGLEPASEDVLLSEVYLGRQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11782839 11784638 + CrPI670011_03g011540.1 Cre03g1154 493184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1154 599 Pfam GRAS domain family 226 592 IPR005202 -
Cre03g1154 599 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 591 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cre03g1154 599 MobiDBLite consensus disorder prediction 1 43 - -
Cre03g1154 599 MobiDBLite consensus disorder prediction 1 16 - -
Cre03g1154 599 Pfam Transcriptional regulator DELLA protein N terminal 48 115 IPR021914 -
Cre03g1154 599 Coils Coil 63 83 - -
Cre03g1154 599 SMART DELLA_2 48 121 - -
Cre03g1154 599 Gene3D - 46 111 IPR038088 -
Cre03g1154 599 ProSiteProfiles GRAS family profile. 217 592 IPR005202 -
Cre03g1154 599 FunFam DELLA protein GAI 46 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1154 K14494 - - csv:101213911 1043.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1154 Cre-Chr3:11782839 Cre09g1895 Cre-Chr9:37683600 3.70E-193 dispersed
Cre03g1154 Cre-Chr3:11782839 Cre04g1560 Cre-Chr4:34204842 2.30E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g2227 . 74 740 GRAS Transcription Factor Family AT2G37650 54.3 3.1e-194 675.6
Cre03g0450 . 314 696 GRAS Transcription Factor Family AT3G46600 56.7 3.6e-126 449.1
Cre04g1365 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.4e-135 479.2
Cre10g0519 . 490 859 GRAS Transcription Factor Family AT3G60630 51.0 2.3e-92 337.0
Cre07g1453 . 21 443 GRAS Transcription Factor Family AT5G41920 64.8 3.6e-147 518.5
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT5G66770 57.4 1.2e-172 603.6
Cre04g1560 . 160 728 GRAS Transcription Factor Family AT5G66770 54.6 8.5e-150 527.7
Cre10g0686 . 45 544 GRAS Transcription Factor Family AT1G50600 58.5 8.7e-162 567.4
Cre02g1271 . 57 532 GRAS Transcription Factor Family AT1G50600 58.0 5.3e-151 531.6
Cre04g1759 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.5e-142 503.4
Cre10g0621 . 1 634 GRAS Transcription Factor Family AT1G63100 50.7 6.8e-164 574.7
Cre09g1895 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.3e-205 713.0
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 4.8e-184 641.3
Cre05g1321 . 32 555 GRAS Transcription Factor Family AT1G14920 56.5 1.3e-157 553.5
Cre10g0600 . 34 400 GRAS Transcription Factor Family AT1G55580 51.6 2.0e-103 373.2
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre02g2309 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 7.7e-142 501.1
Cre02g1271 . 19 532 GRAS Transcription Factor Family AT5G48150 63.3 9.6e-179 623.6
Cre10g0686 . 17 544 GRAS Transcription Factor Family AT5G48150 59.2 1.4e-174 609.8
Cre04g1759 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.7e-151 533.1
Cre09g1895 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.7e-211 732.6
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 1.2e-188 656.8
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT2G01570 58.4 8.8e-163 570.9
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT3G03450 62.6 2.4e-178 622.5
Cre09g1895 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.8e-171 599.0
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT3G03450 58.5 2.2e-160 562.8
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.6e-158 555.8
Cre09g1895 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.7e-155 545.8
Cre05g1321 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 4.6e-139 491.9
Cre09g0930 . 1 570 GRAS Transcription Factor Family AT1G21450 57.6 1.3e-174 610.1
Cre10g0686 . 168 544 GRAS Transcription Factor Family AT1G21450 52.9 1.8e-115 413.7
Cre03g0450 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 5.6e-128 455.3
Cre10g2227 . 369 740 GRAS Transcription Factor Family AT5G59450 54.1 2.1e-114 410.2
Cre04g1759 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.7e-176 615.1
Cre10g0686 . 60 544 GRAS Transcription Factor Family AT4G17230 52.2 3.1e-135 479.2
Cre02g1271 . 134 532 GRAS Transcription Factor Family AT2G04890 64.4 2.1e-147 519.2
Cre10g0686 . 166 544 GRAS Transcription Factor Family AT2G04890 62.5 1.6e-142 503.1
Cre04g1759 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 3.0e-125 445.7
Cre03g1575 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 6.1e-178 620.9
Cre05g2260 . 49 469 GRAS Transcription Factor Family AT1G50420 60.2 4.7e-138 488.4
Cre06g1069 . 472 837 GRAS Transcription Factor Family AT4G00150 60.2 5.5e-122 435.3
Cre10g0519 . 496 859 GRAS Transcription Factor Family AT4G00150 55.4 3.0e-104 376.3
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT3G50650 52.1 1.5e-148 523.5
Cre07g1453 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 8.6e-135 478.0
Cre04g1376 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 1.0e-157 553.9
Cre02g1577 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 4.7e-123 438.7
Cre06g0871 . 64 455 GRAS Transcription Factor Family AT4G37650 50.7 1.2e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53333 PF03514 GRAS 4.50E-135 CL0063 Cre TF