Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1159 ATGGCACTTGCAAATTCAGCTCTACAAGAAGTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAACAACAGCAGCAGCAGCAACAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGAAGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGGTCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGACATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGTACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAAAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA 885 39.77 MALANSALQEVDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFEAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQDIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11919237 11921887 - CrPI670011_03g011590.1 Cre03g1159 493189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1159 294 MobiDBLite consensus disorder prediction 190 209 - -
Cre03g1159 294 FunFam Transcription factor bHLH83 195 254 - -
Cre03g1159 294 Pfam Helix-loop-helix DNA-binding domain 205 247 IPR011598 GO:0046983(InterPro)
Cre03g1159 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 255 IPR036638 GO:0046983(InterPro)
Cre03g1159 294 CDD bHLH_AtIND_like 198 260 - -
Cre03g1159 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983(InterPro)
Cre03g1159 294 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 58 259 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1159 294 SMART finulus 203 252 IPR011598 GO:0046983(InterPro)
Cre03g1159 294 Gene3D - 190 254 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1031 Cre-Chr2:8027448 Cre03g1159 Cre-Chr3:11919237 5.50E-18 dispersed
Cre03g1159 Cre-Chr3:11919237 Cre10g1196 Cre-Chr10:24562922 2.30E-18 dispersed
Cre03g1159 Cre-Chr3:11919237 Cre08g1586 Cre-Chr8:28404131 1.70E-18 transposed
Cre03g1159 Cre-Chr3:11919237 Cre05g2237 Cre-Chr5:33985444 1.70E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53334 PF00010 HLH 9.40E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1159 - - - 0.0