Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1179 | ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAAGCCGGCGGCGGCCGGATTCGTCGGAGGAGGAGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGATTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTGCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTGCTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTTAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTTAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCGCTACATATAGCTGCCTCAGAAGGGCTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAACCACCCCGCTTGATGAAGGCCGAATTTGTGGAAACAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA | 2514 | 41.69 | MAISGGREEEEEEEEEEEERSRRRPDSSEEEEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGTTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH | 837 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12598224 | 12608397 | + | CrPI670011_03g011790.1 | Cre03g1179 | 493209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1179 | 837 | PANTHER | POTASSIUM CHANNEL AKT1 | 36 | 832 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cre03g1179 | 837 | Gene3D | - | 545 | 653 | IPR036770 | - | |
| Cre03g1179 | 837 | FunFam | Potassium channel SKOR | 91 | 336 | - | - | |
| Cre03g1179 | 837 | PRINTS | Ankyrin repeat signature | 701 | 715 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | PRINTS | Ankyrin repeat signature | 589 | 604 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | Pfam | Cyclic nucleotide-binding domain | 431 | 515 | IPR000595 | - | |
| Cre03g1179 | 837 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cre03g1179 | 837 | Gene3D | - | 93 | 337 | - | - | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat region circular profile. | 685 | 717 | - | - | |
| Cre03g1179 | 837 | Gene3D | Jelly Rolls | 395 | 536 | IPR014710 | - | |
| Cre03g1179 | 837 | SMART | ANK_2a | 652 | 681 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | SMART | ANK_2a | 588 | 617 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | SMART | ANK_2a | 685 | 714 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | SMART | ANK_2a | 621 | 650 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | Gene3D | - | 654 | 749 | IPR036770 | - | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat region circular profile. | 588 | 620 | - | - | |
| Cre03g1179 | 837 | Pfam | KHA, dimerisation domain of potassium ion channel | 763 | 832 | IPR021789 | - | |
| Cre03g1179 | 837 | Gene3D | Helix hairpin bin | 338 | 394 | - | - | |
| Cre03g1179 | 837 | FunFam | Potassium channel KAT2 | 399 | 535 | - | - | |
| Cre03g1179 | 837 | Pfam | Ion transport protein | 90 | 338 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre03g1179 | 837 | SUPERFAMILY | Voltage-gated potassium channels | 85 | 336 | - | - | |
| Cre03g1179 | 837 | PRINTS | EAG/ELK/ERG potassium channel family signature | 283 | 300 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre03g1179 | 837 | PRINTS | EAG/ELK/ERG potassium channel family signature | 327 | 336 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre03g1179 | 837 | PRINTS | EAG/ELK/ERG potassium channel family signature | 235 | 245 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre03g1179 | 837 | PRINTS | EAG/ELK/ERG potassium channel family signature | 126 | 136 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre03g1179 | 837 | ProSiteProfiles | KHA domain profile. | 764 | 837 | IPR021789 | - | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat profile. | 588 | 620 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | SUPERFAMILY | Ankyrin repeat | 560 | 740 | IPR036770 | - | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat profile. | 685 | 717 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat region circular profile. | 621 | 652 | - | - | |
| Cre03g1179 | 837 | SMART | cnmp_10 | 411 | 529 | IPR000595 | - | |
| Cre03g1179 | 837 | Pfam | Ankyrin repeats (3 copies) | 657 | 739 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | Pfam | Ankyrin repeats (3 copies) | 563 | 650 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | CDD | CAP_ED | 411 | 525 | IPR000595 | - | |
| Cre03g1179 | 837 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 411 | 531 | IPR000595 | - | |
| Cre03g1179 | 837 | ProSiteProfiles | Ankyrin repeat profile. | 621 | 653 | IPR002110 | GO:0005515(InterPro) | |
| Cre03g1179 | 837 | SUPERFAMILY | cAMP-binding domain-like | 339 | 530 | IPR018490 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1179 | Cre-Chr3:12598224 | Cre06g1932 | Cre-Chr6:26481846 | 4.50E-88 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1179 | K21867 | - | csv:101210912 | 1543.87 |