Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1179 ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAAGCCGGCGGCGGCCGGATTCGTCGGAGGAGGAGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGATTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTGCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTGCTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTTAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTTAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCGCTACATATAGCTGCCTCAGAAGGGCTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAACCACCCCGCTTGATGAAGGCCGAATTTGTGGAAACAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA 2514 41.69 MAISGGREEEEEEEEEEEERSRRRPDSSEEEEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGTTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH 837
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12598224 12608397 + CrPI670011_03g011790.1 Cre03g1179 493209
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1179 837 PANTHER POTASSIUM CHANNEL AKT1 36 832 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cre03g1179 837 Gene3D - 545 653 IPR036770 -
Cre03g1179 837 FunFam Potassium channel SKOR 91 336 - -
Cre03g1179 837 PRINTS Ankyrin repeat signature 701 715 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 PRINTS Ankyrin repeat signature 589 604 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 Pfam Cyclic nucleotide-binding domain 431 515 IPR000595 -
Cre03g1179 837 MobiDBLite consensus disorder prediction 1 44 - -
Cre03g1179 837 Gene3D - 93 337 - -
Cre03g1179 837 ProSiteProfiles Ankyrin repeat region circular profile. 685 717 - -
Cre03g1179 837 Gene3D Jelly Rolls 395 536 IPR014710 -
Cre03g1179 837 SMART ANK_2a 652 681 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 SMART ANK_2a 588 617 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 SMART ANK_2a 685 714 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 SMART ANK_2a 621 650 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 Gene3D - 654 749 IPR036770 -
Cre03g1179 837 ProSiteProfiles Ankyrin repeat region circular profile. 588 620 - -
Cre03g1179 837 Pfam KHA, dimerisation domain of potassium ion channel 763 832 IPR021789 -
Cre03g1179 837 Gene3D Helix hairpin bin 338 394 - -
Cre03g1179 837 FunFam Potassium channel KAT2 399 535 - -
Cre03g1179 837 Pfam Ion transport protein 90 338 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1179 837 SUPERFAMILY Voltage-gated potassium channels 85 336 - -
Cre03g1179 837 PRINTS EAG/ELK/ERG potassium channel family signature 283 300 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1179 837 PRINTS EAG/ELK/ERG potassium channel family signature 327 336 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1179 837 PRINTS EAG/ELK/ERG potassium channel family signature 235 245 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1179 837 PRINTS EAG/ELK/ERG potassium channel family signature 126 136 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre03g1179 837 ProSiteProfiles KHA domain profile. 764 837 IPR021789 -
Cre03g1179 837 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 SUPERFAMILY Ankyrin repeat 560 740 IPR036770 -
Cre03g1179 837 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 ProSiteProfiles Ankyrin repeat region circular profile. 621 652 - -
Cre03g1179 837 SMART cnmp_10 411 529 IPR000595 -
Cre03g1179 837 Pfam Ankyrin repeats (3 copies) 657 739 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 Pfam Ankyrin repeats (3 copies) 563 650 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 CDD CAP_ED 411 525 IPR000595 -
Cre03g1179 837 ProSiteProfiles cAMP/cGMP binding motif profile. 411 531 IPR000595 -
Cre03g1179 837 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515(InterPro)
Cre03g1179 837 SUPERFAMILY cAMP-binding domain-like 339 530 IPR018490 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1179 Cre-Chr3:12598224 Cre06g1932 Cre-Chr6:26481846 4.50E-88 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1179 K21867 - csv:101210912 1543.87