Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1187 ATGGGTTCTTTGCCTTCCGAAGCTTTGGCCGTCGAAATTACCGACACCCATATTCATACCGTCGCCGGTGCCGGCGCAGAAACCTCTGAATGGCTTCTCAATTCCCCCAACCCTCCAACTTTGTGGGAAGAAATTGTGGACGCCATCAAAGGAAATGCCATTCCTCGAAGTTGCACAAAGACCCCCAACAAAAACACTTCTTCTTCTTCTTCAAGCTCTGGAAAACAGAGCATTTTCAAAACCATACTTTCCCTTCTGCAGAGGGTGTTCCCGATCCTTAAATTGCCTCGAAATTACAAAGCCTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCAGCATCCCTCAGAGTATTGGGTATGCTAACTTGGCAAAGCTTGATCCTCAGTTCGGTCTCTATACAAGTGTTGTTCCTCCTTTGATTTATGCATTTATGGGGAGTTCGAGAGAGATAGCGATTGGACCGGTGGCTGTGGTTTCATTGCTTCTTTCGTCTATGCTTCAAGAAATTCAAGATCCTGTTGCAGACTCAGTTGCTTATAGAAGGCTTGTTTTCACTGTAACTTTATTTGCAGGGATTTTCCAAGCATCATTTGGACTCTTGAGACTGGGTTTTCTTGTGGACTTCCTATCTCATGCTGCCATTGTTGGGTTCATGGCTGGGGCTGCCATTCTCATTGGTCTTCAACAAATGAAAGGCTTACTTGCCATCAGCAACTTCACCACTAAAACTGATGTGGTTTCTGTTTTGGAGTCTGTGGTGAAATCTGTTCACCAGACTTGGTACCCTTTGAACATTGTACTTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCCAGGTTCATAGGCAGAAGGAAGAAGAAGCTATTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTTATTCTCTCCACTTTGATAGTGTTTGTTTCAAGAGCTGACAAACATGGAGTTAAGATAGTGAAGGAAGTGAAAGAAGGACTGAACCCAATCTCCATTCATCAGCTTCAATTGAACAGCTCAACTGTTGGGTTAGCTGCAAAAGCTGGCCTCATTGCTGCCCTTATAGCTCTCACAGAAGCCATCGCGGTGGGCCGATCGTTCGCCTCGATTAAAGGCTACAGCATTGATGGGAACAAGGAGATGATAGCCATGGGATTGATGAACATAATAGGCTCTTTAACATCTTGTTACATAGCGACTGGGTCATTCTCAAGAACTGCTGTGAATTATAGTGCTGGGTGTGAAAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGGTGACACTGCAATTTATGACTCGGTTTCTTTACTTTACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCAGCTCTTCCTGGTCTCATTGACATTAATGAAGCTTTGCATATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCGGTCGAATTTGGCCTTCTTGTAGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAGTAAGACCAGCCACAGAAGAGGTGGGAAGGCTTCCAAGAAGTGAGATGTTTTGCAACATGAAGCAATTCCCCATGGCCACAAAAACTCAAGGACTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCTAGTTTCATTAGAGACAGGATAATGAGATTGGTGGAAGATGATGATGATGATGATATTGAAGAAAAAACAGCAAAAGATCAACCTAAACAAGTAGTTGTTGACATGTGCAATGTTTTGAATATCGATACATCAGGAATCATTGCTTTAGAGGAACTTCACAAAAGGTTGTTGTTGCACGGCGTTCAACTAACAATAGCCAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAGACAAACTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCCTGCCTTGGAAATGCTTCCAAATTGCCTTCTCCCTTACCAAAGTCATTGTGA 2031 42.84 MGSLPSEALAVEITDTHIHTVAGAGAETSEWLLNSPNPPTLWEEIVDAIKGNAIPRSCTKTPNKNTSSSSSSSGKQSIFKTILSLLQRVFPILKLPRNYKASKFKNDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADSVAYRRLVFTVTLFAGIFQASFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLESVVKSVHQTWYPLNIVLGCSFLIFLLVARFIGRRKKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNSSTVGLAAKAGLIAALIALTEAIAVGRSFASIKGYSIDGNKEMIAMGLMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAITVMVTLQFMTRFLYFTPMAILASIILSALPGLIDINEALHIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISVRPATEEVGRLPRSEMFCNMKQFPMATKTQGLSIIRINSALLCFANASFIRDRIMRLVEDDDDDDIEEKTAKDQPKQVVVDMCNVLNIDTSGIIALEELHKRLLLHGVQLTIASPKWEVIHKLKKTNFVERIEGRVFLSVGEAVDSCLGNASKLPSPLPKSL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12698964 12705409 - CrPI670011_03g011870.1 Cre03g1187 493217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1187 676 Gene3D STAS domain 516 663 IPR036513 -
Cre03g1187 676 MobiDBLite consensus disorder prediction 56 74 - -
Cre03g1187 676 NCBIfam sulfate permease 91 654 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1187 676 ProSitePatterns SLC26A transporters signature. 133 154 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cre03g1187 676 SUPERFAMILY SpoIIaa-like 543 661 IPR036513 -
Cre03g1187 676 CDD STAS_SulP_like_sulfate_transporter 537 652 - -
Cre03g1187 676 ProSiteProfiles STAS domain profile. 556 661 IPR002645 -
Cre03g1187 676 PANTHER SULFATE TRANSPORTER 75 662 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1187 676 MobiDBLite consensus disorder prediction 54 74 - -
Cre03g1187 676 Pfam Sulfate permease family 104 484 IPR011547 GO:0016020(InterPro)
Cre03g1187 676 Pfam STAS domain 538 657 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1187 Cre-Chr3:12698964 Cre09g1526 Cre-Chr9:30768953 3.70E-165 dispersed
Cre03g1187 Cre-Chr3:12698964 Cre03g1189 Cre-Chr3:12746868 6.80E-167 proximal
Cre07g1311 Cre-Chr7:27497846 Cre03g1187 Cre-Chr3:12698964 2.10E-221 transposed
Cre11g1949 Cre-Chr11:31287786 Cre03g1187 Cre-Chr3:12698964 3.70E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1187 K17469 - csv:101211892 1126.31