Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1189 ATGGACTCAAGAGGCCATTCCAATGGCAGAGAACTCGAAACAAAGGACATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACACAGTGCATTCATAAGGTGGGGGTTCCACCAAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTCGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCTCGAAAGTTGGTCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAGTTACAATCTGACTAAATTTAGAGGAGATATAATTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGTTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTAATGGGTAGCTCAAGAGACATAGCGATTGGACCCGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATAGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAGTTTACAAAGAAAACAGACATTATTTCTGTAATGCGCTCAGTATTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTATGTTTTCTTCTATTAGCCAAGTATATTGGAAAGAAAAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGTAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGTGCAGTGGCTGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTAGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAATTCATCACGCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCTGTTCTCGGAAAGATCCCTAGGACTACAGTATACAGGAACACTCAACAGTATCCAGAAGCAACAAGGGTTCCTGGCATTCTCATTGTGAGAGTTGATTCTGCAATTTACTTTTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAAAAAAGAAGGCTTATTCAACAAAAACTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGAATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAACGAGACATTCAGCTTGTTTTGGCAAACCCTGGGCCGGTAGTGATTGACAAACTCCACGCGTCCAATCTTGCTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTCTCATCTTGCTCCCCAAAATTGGTGGAAGAAGCCTAG 1977 41.78 MDSRGHSNGRELETKDMDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRSYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLCFLLLAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHVDQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQKKKAYSTKTQFLIVEMSPVTDIDTSGIHALEELYRNLQKRDIQLVLANPGPVVIDKLHASNLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12746868 12751022 + CrPI670011_03g011890.1 Cre03g1189 493219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1189 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Cre03g1189 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1189 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020(InterPro)
Cre03g1189 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Cre03g1189 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cre03g1189 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Cre03g1189 658 FunFam Sulfate transporter 31 507 653 - -
Cre03g1189 658 Pfam STAS domain 528 646 IPR002645 -
Cre03g1189 658 Gene3D STAS domain 507 653 IPR036513 -
Cre03g1189 658 PANTHER SULFATE TRANSPORTER 50 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0452 Cre-Chr1:3835069 Cre03g1189 Cre-Chr3:12746868 9.70E-108 dispersed
Cre03g1189 Cre-Chr3:12746868 Cre11g1949 Cre-Chr11:31287786 6.30E-303 dispersed
Cre03g1187 Cre-Chr3:12698964 Cre03g1189 Cre-Chr3:12746868 6.80E-167 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1189 K17470 - csv:101212138 1221.84