Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1217 ATGAATCGTCTGCCTCAGTTTTTTTCTCCTAGGAAGAAAGGGAAACCCATGGATCCGAGGAAAATCGCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAACATTGACTATGATGCTACTTCCTCGTCTTCTTCGCTTGAAGATTCTTCTGGGTCTCTCTATACTCGCTCCATGGAGACCCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTTGCTATTCCGATGGAGGCATGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCCATGGACACCTCCCCGAAGACCGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTGTCCACGCCTAAGTCGGAATTTCCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCTCGGCCTCCTTTACTCAAGCCACCGCCGTCGATGAGGCTTCCAAATTTGGATAATACTTGCTCCACTTGGGACATTTTGAAAGCTTTTGCTCCGTTAGTTGATGATGAACATCAGGAGGAAGTAGGAGAACGAGTGGAACCATTAGTTGAAGGAGAAGGAGAGGGAAATATTGTGAGGCCCGTGATGCGCATAGGGTCTTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTTGTCCCATTATCACATCCTGGGTGGTCGGCAGGCTTCTTGGACGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGTACGTTCTTTGCACTGAAAGAAGTTTCACTGCTCGAGGATGATAGTCAGGGAAGACAAAGTATCGATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACGCATTCGGATGGGTCAAAACTCTATATCTTCCTCGAGCTTGTATCTCAGGGCTCCCTTATGAGTCTATATCAAAGGACAATCCTTATGGACTCCATTGTTTCTGCCTACACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATAAAAATGGATCTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTGCGTATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATATTCAGAACTCGAATCTCATATGCAAGCACTATTTAGGATTGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCGGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTATTAAATCACTCGTTTGTGAAAAGACCAGTTTCCAGTTTATCAGGGTCGGCATCTCCTTACAACAGGCCAGGCAGAAGGATTTAA 1686 46.44 MNRLPQFFSPRKKGKPMDPRKIAGKPKLGRLNAAKNIDYDATSSSSSLEDSSGSLYTRSMETPDPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISKDKEDKEIEDELCRRVKDSVRISVELSTPKSEFPELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNLDNTCSTWDILKAFAPLVDDEHQEEVGERVEPLVEGEGEGNIVRPVMRIGSWGSFTTSNDDDSSSSTTEPANISPNMRGCPIITSWVVGRLLGRGSFGSVYEAISEDGTFFALKEVSLLEDDSQGRQSIDQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTILMDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDKNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALFRIGKGKPPAVPESLPKDAQDFIRQCLQVNPKDRPTAADLLNHSFVKRPVSSLSGSASPYNRPGRRI 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13383490 13388680 + CrPI670011_03g012170.1 Cre03g1217 493247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1217 561 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 MobiDBLite consensus disorder prediction 1 69 - -
Cre03g1217 561 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 119 542 IPR050538 -
Cre03g1217 561 Pfam Protein kinase domain 287 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 MobiDBLite consensus disorder prediction 37 64 - -
Cre03g1217 561 SUPERFAMILY Protein kinase-like (PK-like) 267 547 IPR011009 -
Cre03g1217 561 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 PRINTS Tyrosine kinase catalytic domain signature 465 487 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 PRINTS Tyrosine kinase catalytic domain signature 364 377 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 PRINTS Tyrosine kinase catalytic domain signature 509 531 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1217 561 Gene3D Transferase(Phosphotransferase) domain 1 284 554 - -
Cre03g1217 561 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524(InterPro)
Cre03g1217 561 MobiDBLite consensus disorder prediction 173 196 - -
Cre03g1217 561 FunFam Mitogen-activated protein kinase 1, putative, expressed 284 552 - -
Cre03g1217 561 MobiDBLite consensus disorder prediction 253 274 - -
Cre03g1217 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1217 Cre-Chr3:13383490 Cre09g2066 Cre-Chr9:39714244 1.40E-64 dispersed
Cre03g1217 Cre-Chr3:13383490 Cre05g1007 Cre-Chr5:9296725 4.70E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63979 PF00069 Pkinase 3.80E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1217 K13414 - csv:101218538 1011.52