Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g1217 | ATGAATCGTCTGCCTCAGTTTTTTTCTCCTAGGAAGAAAGGGAAACCCATGGATCCGAGGAAAATCGCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAACATTGACTATGATGCTACTTCCTCGTCTTCTTCGCTTGAAGATTCTTCTGGGTCTCTCTATACTCGCTCCATGGAGACCCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTTGCTATTCCGATGGAGGCATGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCCATGGACACCTCCCCGAAGACCGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTGTCCACGCCTAAGTCGGAATTTCCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCTCGGCCTCCTTTACTCAAGCCACCGCCGTCGATGAGGCTTCCAAATTTGGATAATACTTGCTCCACTTGGGACATTTTGAAAGCTTTTGCTCCGTTAGTTGATGATGAACATCAGGAGGAAGTAGGAGAACGAGTGGAACCATTAGTTGAAGGAGAAGGAGAGGGAAATATTGTGAGGCCCGTGATGCGCATAGGGTCTTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTTGTCCCATTATCACATCCTGGGTGGTCGGCAGGCTTCTTGGACGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGTACGTTCTTTGCACTGAAAGAAGTTTCACTGCTCGAGGATGATAGTCAGGGAAGACAAAGTATCGATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACGCATTCGGATGGGTCAAAACTCTATATCTTCCTCGAGCTTGTATCTCAGGGCTCCCTTATGAGTCTATATCAAAGGACAATCCTTATGGACTCCATTGTTTCTGCCTACACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATAAAAATGGATCTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTGCGTATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATATTCAGAACTCGAATCTCATATGCAAGCACTATTTAGGATTGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCGGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTATTAAATCACTCGTTTGTGAAAAGACCAGTTTCCAGTTTATCAGGGTCGGCATCTCCTTACAACAGGCCAGGCAGAAGGATTTAA | 1686 | 46.44 | MNRLPQFFSPRKKGKPMDPRKIAGKPKLGRLNAAKNIDYDATSSSSSLEDSSGSLYTRSMETPDPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISKDKEDKEIEDELCRRVKDSVRISVELSTPKSEFPELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNLDNTCSTWDILKAFAPLVDDEHQEEVGERVEPLVEGEGEGNIVRPVMRIGSWGSFTTSNDDDSSSSTTEPANISPNMRGCPIITSWVVGRLLGRGSFGSVYEAISEDGTFFALKEVSLLEDDSQGRQSIDQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTILMDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDKNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALFRIGKGKPPAVPESLPKDAQDFIRQCLQVNPKDRPTAADLLNHSFVKRPVSSLSGSASPYNRPGRRI | 561 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13383490 | 13388680 | + | CrPI670011_03g012170.1 | Cre03g1217 | 493247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g1217 | 561 | SMART | serkin_6 | 286 | 540 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Cre03g1217 | 561 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 119 | 542 | IPR050538 | - | |
Cre03g1217 | 561 | Pfam | Protein kinase domain | 287 | 540 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | MobiDBLite | consensus disorder prediction | 37 | 64 | - | - | |
Cre03g1217 | 561 | SUPERFAMILY | Protein kinase-like (PK-like) | 267 | 547 | IPR011009 | - | |
Cre03g1217 | 561 | ProSiteProfiles | Protein kinase domain profile. | 286 | 540 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | PRINTS | Tyrosine kinase catalytic domain signature | 465 | 487 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | PRINTS | Tyrosine kinase catalytic domain signature | 364 | 377 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | PRINTS | Tyrosine kinase catalytic domain signature | 399 | 417 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | PRINTS | Tyrosine kinase catalytic domain signature | 509 | 531 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre03g1217 | 561 | Gene3D | Transferase(Phosphotransferase) domain 1 | 284 | 554 | - | - | |
Cre03g1217 | 561 | ProSitePatterns | Protein kinases ATP-binding region signature. | 292 | 314 | IPR017441 | GO:0005524(InterPro) | |
Cre03g1217 | 561 | MobiDBLite | consensus disorder prediction | 173 | 196 | - | - | |
Cre03g1217 | 561 | FunFam | Mitogen-activated protein kinase 1, putative, expressed | 284 | 552 | - | - | |
Cre03g1217 | 561 | MobiDBLite | consensus disorder prediction | 253 | 274 | - | - | |
Cre03g1217 | 561 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 405 | 417 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1217 | Cre-Chr3:13383490 | Cre09g2066 | Cre-Chr9:39714244 | 1.40E-64 | dispersed | |
Cre03g1217 | Cre-Chr3:13383490 | Cre05g1007 | Cre-Chr5:9296725 | 4.70E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
63979 | PF00069 | Pkinase | 3.80E-71 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g1217 | K13414 | - | csv:101218538 | 1011.52 |