Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1235 ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGTAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTTTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGGAGTTGTATCAGCCACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGGTGGCTGCAGAGGCTACCGGAGGGGAAGCTGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTGGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGATTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA 1278 44.37 MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTGVVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13960451 13961813 + CrPI670011_03g012350.1 Cre03g1235 493265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1235 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Cre03g1235 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 422 - -
Cre03g1235 425 Gene3D - 213 423 - -
Cre03g1235 425 MobiDBLite consensus disorder prediction 42 69 - -
Cre03g1235 425 ProSitePatterns Zinc finger C2H2 type domain signature. 189 212 IPR013087 -
Cre03g1235 425 MobiDBLite consensus disorder prediction 93 107 - -
Cre03g1235 425 MobiDBLite consensus disorder prediction 52 69 - -
Cre03g1235 425 MobiDBLite consensus disorder prediction 1 28 - -
Cre03g1235 425 SUPERFAMILY ADP-ribosylation 214 423 - -
Cre03g1235 425 MobiDBLite consensus disorder prediction 108 126 - -
Cre03g1235 425 MobiDBLite consensus disorder prediction 93 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2273 Cre-Chr2:36324571 Cre03g1235 Cre-Chr3:13960451 1.40E-52 dispersed
Cre03g1235 Cre-Chr3:13960451 Cre05g2002 Cre-Chr5:32052705 5.30E-85 dispersed
Cre03g1235 Cre-Chr3:13960451 Cre03g1238 Cre-Chr3:14068257 5.40E-53 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53336 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1235 - - - 0.0