Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1273 ATGATTGAAAAGGAATTTTTTACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCGTCTGCCATAGACACTCATTCTGGTGAAAAAGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAACGACGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGCTGTCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAGAAGGCCAAAAGGTATTTGAGTGGTATGAGAAAAAAGAATCCTATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTTCTTGCATTTGATCCTGAGGACCGTCCTTCTGCGGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAAGAGTACCTTCAAGGTTCTGGGAGTCACTTTCTGTATCCTAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTTTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATTCACCAAGAGATGAAGATGATGATGATGAAAAACATAAAATAGAACAGCGAAATGCAGCTTCGGCTGAACGTGCAGCGCTTCAAAGCCCTCCTGGACCTGCTTATCCATTAACTGCTGGAAACGGTTCTGTTCAAGTTGCAAGGAAGGAAAGAATACAACATTGCTCGCCTTCCTCAGATTCTTAA 1410 40.99 MIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYSPRDEDDDDEKHKIEQRNAASAERAALQSPPGPAYPLTAGNGSVQVARKERIQHCSPSSDS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18957520 18961226 + CrPI670011_03g012730.1 Cre03g1273 493303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1273 469 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
Cre03g1273 469 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 348 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre03g1273 469 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Cre03g1273 469 FunFam Mitogen-activated protein kinase 102 330 - -
Cre03g1273 469 MobiDBLite consensus disorder prediction 384 469 - -
Cre03g1273 469 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524(InterPro)
Cre03g1273 469 FunFam Mitogen-activated protein kinase 5 108 - -
Cre03g1273 469 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1273 469 MobiDBLite consensus disorder prediction 384 427 - -
Cre03g1273 469 CDD STKc_TDY_MAPK 15 352 - -
Cre03g1273 469 FunFam Mitogen-activated protein kinase 331 353 - -
Cre03g1273 469 SMART serkin_6 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1273 469 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1273 469 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1273 469 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1407 Cre-Chr1:27341812 Cre03g1273 Cre-Chr3:18957520 1.70E-186 dispersed
Cre03g1273 Cre-Chr3:18957520 Cre07g1026 Cre-Chr7:13598636 3.50E-255 dispersed
Cre03g1273 Cre-Chr3:18957520 Cre06g2306 Cre-Chr6:31024317 1.30E-209 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63981 PF00069 Pkinase 1.60E-67 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1273 - - - 0.0