Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g1277 | ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCCGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGTGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCCGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACATACAATGACGAACTCCAGCAGAGCAAACGCCAAAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCCGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTGGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCCGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCGAACCTTTGTAA | 951 | 54.78 | MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIEPL | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 19182165 | 19183115 | - | CrPI670011_03g012770.1 | Cre03g1277 | 493307 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g1277 | 316 | CDD | B3_DNA | 167 | 267 | IPR003340 | GO:0003677(InterPro) | |
Cre03g1277 | 316 | SMART | rav1_2 | 44 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1277 | 316 | FunFam | AP2 domain-containing protein RAP2.8 | 43 | 100 | - | - | |
Cre03g1277 | 316 | Gene3D | AP2/ERF domain | 43 | 100 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1277 | 316 | ProSiteProfiles | B3 DNA-binding domain profile. | 168 | 272 | IPR003340 | GO:0003677(InterPro) | |
Cre03g1277 | 316 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 43 | 271 | IPR044800 | GO:0003700(InterPro) | |
Cre03g1277 | 316 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - | |
Cre03g1277 | 316 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
Cre03g1277 | 316 | Gene3D | - | 158 | 274 | IPR015300 | - | |
Cre03g1277 | 316 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1277 | 316 | CDD | AP2 | 43 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1277 | 316 | SMART | B3_2 | 168 | 270 | IPR003340 | GO:0003677(InterPro) | |
Cre03g1277 | 316 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cre03g1277 | 316 | SUPERFAMILY | DNA-binding domain | 43 | 99 | IPR016177 | GO:0003677(InterPro) | |
Cre03g1277 | 316 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Cre03g1277 | 316 | Pfam | B3 DNA binding domain | 168 | 262 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1277 | Cre-Chr3:19182165 | Cre06g2098 | Cre-Chr6:28776103 | 2.00E-44 | dispersed | |
Cre03g1277 | Cre-Chr3:19182165 | Cre05g2474 | Cre-Chr5:36120339 | 2.20E-104 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53339 | PF02362 | B3 | 1.60E-27 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g1277 | K09287 | - | csv:101206328 | 565.074 |