Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1283 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGAGAGTGGATGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAGCAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGGCCCCTCGACGCCGCCCACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGATGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACTCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA 831 46.33 MQQSWKLSCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQPWSIYH 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20164915 20166230 - CrPI670011_03g012830.1 Cre03g1283 493313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1283 276 FunFam Zinc finger protein WIP2 159 241 - -
Cre03g1283 276 Gene3D Classic Zinc Finger 186 245 - -
Cre03g1283 276 Gene3D Classic Zinc Finger 104 127 - -
Cre03g1283 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Cre03g1283 276 SMART c2h2final6 153 185 IPR013087 -
Cre03g1283 276 SMART c2h2final6 190 210 IPR013087 -
Cre03g1283 276 SMART c2h2final6 105 127 IPR013087 -
Cre03g1283 276 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 189 213 - -
Cre03g1283 276 MobiDBLite consensus disorder prediction 33 58 - -
Cre03g1283 276 PANTHER ZINC FINGER PROTEIN WIP2 85 261 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre03g1283 276 SUPERFAMILY beta-beta-alpha zinc fingers 100 128 IPR036236 -
Cre03g1283 276 SUPERFAMILY beta-beta-alpha zinc fingers 173 210 IPR036236 -
Cre03g1283 276 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1283 Cre-Chr3:20164915 Cre10g1839 Cre-Chr10:32963284 1.00E-84 dispersed
Cre03g1283 Cre-Chr3:20164915 Cre02g2631 Cre-Chr2:39577417 1.20E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53340 PF00096 zf-C2H2 0.0088 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1283 - - - 0.0