Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1331 ATGGGAGACGCCCTTCCTGATGCTGCCATGGACGCTGTTCAAAAGCGCCTCATGTTTGAGGACGAGTGCATTTTAGTTGATGAGAATGACCGTGTCGTTGGTCATGAATCCAAGTATAACTGTCACTTGATGGAAAATATCGAATCTAAGAACTGGCTTCATCGCGCTTTCAGTGTCTTTTTATTCAATTCCAAATACGAATTGCTTCTTCAGCAACGGTCTGCAACAAAAGTGACGTTTCCGCTTGTCTGGACGAACACTTGCTGCAGTCATCCATTGTATAGAAAATCTGAACTAATTGAGGAGGATGCTCTTGGTGCAAGGAATGCTGCCCAGAGGAAGCTTTGGGACGAACTTGGTATTCCTGCTGAAGACGTTCCAGTTGACCAGTTCATTCCCCTCGGTCGCATGCTATACAAGGCACCCTCTGATGGCAAATGGGGGGAGCATGAATTGGACTATCTCCTCTTCATTGTTCGAGATGTCAATGTGAACCCGAACCCAGACGAAGTGGCGGACGTGAAATATGTAAACAAGGAGCAGTTGAAGGAGCTTCTAAGAAAAGCAGATGCTGGAGAAGAGGGGTTGAAGCTCTCCCCTTGGTTCAGGCTTGTTGTGGACAACTTTTTGTTCACTTGGTGGGATCATGTGGAGAAGGGGACTCTCAGCGAAGCTGCTGACATGAAAACAATTCACAAATTGACTTAA 708 46.33 MGDALPDAAMDAVQKRLMFEDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRKSELIEEDALGARNAAQRKLWDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADVKYVNKEQLKELLRKADAGEEGLKLSPWFRLVVDNFLFTWWDHVEKGTLSEAADMKTIHKLT 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23572418 23575980 + CrPI670011_03g013310.1 Cre03g1331 493361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1331 235 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 8 234 - GO:0004452(PANTHER)|GO:0005737(PANTHER)|GO:0009240(PANTHER)
Cre03g1331 235 PIRSF Isopentenyldiphpt_isom 2 230 IPR011876 GO:0004452(InterPro)|GO:0008299(InterPro)
Cre03g1331 235 FunFam isopentenyl-diphosphate Delta-isomerase I 1 234 - -
Cre03g1331 235 ProSiteProfiles Nudix hydrolase domain profile. 52 204 IPR000086 -
Cre03g1331 235 NCBIfam isopentenyl-diphosphate delta-isomerase 23 205 IPR011876 GO:0004452(InterPro)|GO:0008299(InterPro)
Cre03g1331 235 Pfam NUDIX domain 53 189 IPR000086 -
Cre03g1331 235 SUPERFAMILY Nudix 22 217 IPR015797 -
Cre03g1331 235 CDD IPP_Isomerase 20 207 IPR011876 GO:0004452(InterPro)|GO:0008299(InterPro)
Cre03g1331 235 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 2 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1331 K01823 - - csv:101209923 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1331 Cre-Chr3:23572418 Cre11g1513 Cre-Chr11:23654846 1.30E-117 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00714 . . . . . . . . . Cla03g01017 Cam03g1069 Cec03g1070 Cco03g1061 Clacu03g1040 Cmu03g1630 Cre03g1331 Lsi06g00693 . . Cme02g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001962 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 3 2 2 2 2 2 3 2 1 66