Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1546 ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAGACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCGGGCGATTACGGATTCGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGCTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG 822 48.05 MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30673712 30675471 + CrPI670011_03g015460.1 Cre03g1546 493576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1546 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
Cre03g1546 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
Cre03g1546 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Cre03g1546 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Cre03g1546 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 15 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1546 Cre-Chr3:30673712 Cre08g1539 Cre-Chr8:28010777 5.00E-44 dispersed
Cre03g1546 Cre-Chr3:30673712 Cre01g1548 Cre-Chr1:28670063 6.80E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1546 K08909 - csv:101202993 530.791