Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1557 ATGGATCAGACGGCTCCTAAGGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTCGAAAGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGACAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAAAAGACGAACTTAGTAACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGCAAAGCGACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGGTGACTCAAAATCTGCAAAACCTAGATCGCTGAATTGA 1407 42.79 MDQTAPKVARNLGSPESCRKFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSGDSKSAKPRSLN 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30944266 30953312 - CrPI670011_03g015570.1 Cre03g1557 493587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1557 468 MobiDBLite consensus disorder prediction 374 402 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 314 373 - -
Cre03g1557 468 PANTHER IQ-DOMAIN 5-RELATED 40 423 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 312 468 - -
Cre03g1557 468 ProSiteProfiles IQ motif profile. 131 159 - -
Cre03g1557 468 Pfam IQ calmodulin-binding motif 133 152 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 Gene3D - 129 176 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 421 450 - -
Cre03g1557 468 SMART iq_5 153 174 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 ProSiteProfiles IQ motif profile. 155 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1557 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1557 Cre-Chr3:30944266 Cre04g1962 Cre-Chr4:37087747 1.50E-32 dispersed
Cre03g1557 Cre-Chr3:30944266 Cre05g1963 Cre-Chr5:31752736 6.80E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42