Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1557 ATGGATCAGACGGCTCCTAAGGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTCGAAAGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGACAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAAAAGACGAACTTAGTAACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGCAAAGCGACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGGTGACTCAAAATCTGCAAAACCTAGATCGCTGAATTGA 1407 42.79 MDQTAPKVARNLGSPESCRKFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSGDSKSAKPRSLN 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30944266 30953312 - CrPI670011_03g015570.1 Cre03g1557 493587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1557 468 MobiDBLite consensus disorder prediction 374 402 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 314 373 - -
Cre03g1557 468 PANTHER IQ-DOMAIN 5-RELATED 40 423 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 312 468 - -
Cre03g1557 468 ProSiteProfiles IQ motif profile. 131 159 - -
Cre03g1557 468 Pfam IQ calmodulin-binding motif 133 152 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 Gene3D - 129 176 - -
Cre03g1557 468 MobiDBLite consensus disorder prediction 421 450 - -
Cre03g1557 468 SMART iq_5 153 174 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Cre03g1557 468 ProSiteProfiles IQ motif profile. 155 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1557 Cre-Chr3:30944266 Cre04g1962 Cre-Chr4:37087747 1.50E-32 dispersed
Cre03g1557 Cre-Chr3:30944266 Cre05g1963 Cre-Chr5:31752736 6.80E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1557 - - - 0.0