Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1653 ATGGAAGATGAAGCCTCCTCCAGCTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGGACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGATCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATATATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGCAAAGCGTATTAGGCTATTTGGAGTGCATATTGATTGA 1083 44.69 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSESSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGAKRIRLFGVHID 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32864793 32865875 - CrPI670011_03g016530.1 Cre03g1653 493683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1653 360 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cre03g1653 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1653 360 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cre03g1653 360 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cre03g1653 360 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1653 360 Gene3D - 164 295 IPR015300 -
Cre03g1653 360 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1653 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 359 IPR044800 GO:0003700(InterPro)
Cre03g1653 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cre03g1653 360 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Cre03g1653 360 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1653 360 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Cre03g1653 360 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1653 Cre-Chr3:32864793 Cre06g2098 Cre-Chr6:28776103 2.70E-82 dispersed
Cre03g1653 Cre-Chr3:32864793 Cre05g2474 Cre-Chr5:36120339 1.00E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53351 PF02362 B3 6.80E-27 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1653 K09287 - csv:101219913 647.121