Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1662 ATGGCAGTAGGTGCTGGGGAATGGTCTGTTGTCTGTGAGCATGCATATTCACTTGCGCAAAACCTGGATCCTAATGGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGGTTTGATGTCTGTCATTAAGCAAAAGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCAGGACATTACTCGGTTACAGGAGTTCTACAAACTATACCGAGAGAAAAATAATGTAGATAAGCTCTGGGAAGGTGAAATGAAATTTAGGGAATCTGGTGCTTTCAGTGGTAATCTTGGAAAAAACATTGTCCTTGGCTCTCTTTATCTCCTTGGTGCTGCCTTTGCGAATCCAACAATGAATCTGTCCAACACTTGGTTGGAACGGAAAACGCTGAAGCGAAACAAAGTCTTTGCAACCCTGAAAGTATTAGCAATGGTACTGGCGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGACAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTGTGACAAATGCTATTGGGTCCTTGACTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAATTTTCCATTCCGGAGACCAGGAGTCCTGACATGCTTGACTTTCTACACTTCGTTTTTGGATTTCAGAATTCCCCTTCCAATGATGATATTCCAGCAGTCGGTCTCTCTCCCTCCAAAGTTCATAAAATCAAGAAACTCGAAGAAGTTATTGGTCAAAAAGCCAGCATACCCTTGGAAGATAAAACGTCAAACCCCAAAGGAAAGAGGAAGTTGTTCAGACCTTATCCTAAACACTACATTCGGAAGAAAACCACCTTCATCAACTCGTGGACAGCCATTGCAAACTCAGACATATTCGAAGAATGCTGTGTTAGAATTCAAATTCTGAGCAACAGCCATATCAGGTCAAAAAATCCTCATTTTAATAGTCACTCCTTCTCTCAATCAAAGTTCACTATTCCCGGCTCTAATGTGTCTTTTATTCGAGGAACCCCTTGCCGCGAGCCTGACTCCGATCAACACATCATTCAAGATGAAGATGGAGACTCGTTAATCAGTGTAAGCAGTGAAGATTTAGAAGTGTCTGACTTAGAAGACGCTTCGGAAGGGGTTGTCTTGTGGCCAGCTAGTGAAGATGATCTGAAGAAACTTTTTCAGTCAAAGGAGGGGTCTATCCATAACAAAGTTGAAAAGACCTCCTTCAAACAAATTGAGCAGCAGTCCATCCCCAAGCACCTACAACCATTAATACATGATTGCGACCTGATCTTCGGATCATAA 1356 42.7 MAVGAGEWSVVCEHAYSLAQNLDPNGEGRGVLQSKTGLMSVIKQKLAKREGGTIDRSQDITRLQEFYKLYREKNNVDKLWEGEMKFRESGAFSGNLGKNIVLGSLYLLGAAFANPTMNLSNTWLERKTLKRNKVFATLKVLAMVLAQLSDAIPEEMKRLMELDATMTEDLIAYNIIPLDAPSVTNAIGSLTEVQAAVSALKYFSGLPKLPAEFSIPETRSPDMLDFLHFVFGFQNSPSNDDIPAVGLSPSKVHKIKKLEEVIGQKASIPLEDKTSNPKGKRKLFRPYPKHYIRKKTTFINSWTAIANSDIFEECCVRIQILSNSHIRSKNPHFNSHSFSQSKFTIPGSNVSFIRGTPCREPDSDQHIIQDEDGDSLISVSSEDLEVSDLEDASEGVVLWPASEDDLKKLFQSKEGSIHNKVEKTSFKQIEQQSIPKHLQPLIHDCDLIFGS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33078338 33088082 + CrPI670011_03g016620.1 Cre03g1662 493692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1662 451 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 13 237 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1662 K11000 - - csv:101216435 331.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1662 Cre-Chr3:33078338 Cre10g1005 Cre-Chr10:18025951 5.20E-115 dispersed
Cre03g1660 Cre-Chr3:32991539 Cre03g1662 Cre-Chr3:33078338 1.50E-92 proximal
Cre03g1662 Cre-Chr3:33078338 Cre03g1666 Cre-Chr3:33133065 1.10E-16 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g117 . . . . . . . . . Cmo11g00828 . . . . . . . Bhi02g01622 Tan09g0906 . . Hepe09g1054 . . . . . . . . . . . . Cone11ag1461 Lsi06g00464 . . . . . . . . . . . . . . Cma11g00822 . . . . Cpe04g00852 . . . . . . . Cla03g01330 Cam03g1408 Cec03g1443 Cco03g1435 Clacu03g1431 Cmu03g1990 Cre03g1662 . Csa01g03113 Chy02g01393 Cme02g00461
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1562 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cre05g1865 . 36 1117 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cre04g0434 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cre09g0394 . 12 1085 Cell Wall Biosynthesis AT5G17420 66.4 0.0e+00 1425.2
Cre08g0188 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cre04g1203 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.4
Cre06g0915 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.3 0.0e+00 1395.2
Cre03g0973 . 531 1506 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1271.5
Cre06g2628 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2347.0
Cre03g1667 . 51 1183 Cell Wall Biosynthesis AT3G07160 75.0 0.0e+00 1693.3
Cre03g1671 . 25 1144 Cell Wall Biosynthesis AT3G07160 73.8 0.0e+00 1683.3
Cre03g1660 . 81 1157 Cell Wall Biosynthesis AT3G07160 70.1 0.0e+00 1512.3
Cre03g1670 . 84 689 Cell Wall Biosynthesis AT3G07160 67.3 9.5e-243 838.2
Cre03g1663 . 6 201 Cell Wall Biosynthesis AT3G07160 72.3 1.6e-85 315.8
Cre03g1662 . 10 239 Cell Wall Biosynthesis AT3G07160 64.1 1.9e-70 265.8
Cre03g1665 . 3 176 Cell Wall Biosynthesis AT3G07160 65.3 2.5e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003310 0 0 0 0 0 5 0 7 9 0 3 0 0 0 0 0 7 0 0 9 0 0 0 0 0 0 0 0 0 0 40