Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1665 ATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTCATGACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGATAACATTTCTTTATGCGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAAAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCCGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGCTCTGGATATTGATGAGAATATTAGCACATCTGACAACCAAAAGGCTTGGTTAGATCTCAATTATGGCCCATCCTTTTTCAATTCATATGAATATTCAAGCATAAAATCAGGATTTTCGGATCTTAGTTCTTCAATGGAGTTTGTTTTCCGTCTACGGATTAGTTAG 696 38.07 MLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKLIESVLDILMMYGAYSTSWRLFVSRILRFLWFSTASASITFLYAKALQEGSKPNAKRVMFRLYVIVIGIYGGVQLCLNILMHIPACRLLTNQCDWWPLVRFFKWMRQALDIDENISTSDNQKAWLDLNYGPSFFNSYEYSSIKSGFSDLSSSMEFVFRLRIS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33109925 33112601 + CrPI670011_03g016650.1 Cre03g1665 493695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1665 231 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 5 176 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1665 K11000 - - csv:101216435 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1665 Cre-Chr3:33109925 Cre06g2628 Cre-Chr6:33864106 5.70E-41 dispersed
Cre03g1665 Cre-Chr3:33109925 Cre03g1670 Cre-Chr3:33210913 1.90E-84 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1562 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cre05g1865 . 36 1117 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cre04g0434 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cre09g0394 . 12 1085 Cell Wall Biosynthesis AT5G17420 66.4 0.0e+00 1425.2
Cre08g0188 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cre04g1203 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.4
Cre06g0915 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.3 0.0e+00 1395.2
Cre03g0973 . 531 1506 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1271.5
Cre06g2628 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2347.0
Cre03g1667 . 51 1183 Cell Wall Biosynthesis AT3G07160 75.0 0.0e+00 1693.3
Cre03g1671 . 25 1144 Cell Wall Biosynthesis AT3G07160 73.8 0.0e+00 1683.3
Cre03g1660 . 81 1157 Cell Wall Biosynthesis AT3G07160 70.1 0.0e+00 1512.3
Cre03g1670 . 84 689 Cell Wall Biosynthesis AT3G07160 67.3 9.5e-243 838.2
Cre03g1663 . 6 201 Cell Wall Biosynthesis AT3G07160 72.3 1.6e-85 315.8
Cre03g1662 . 10 239 Cell Wall Biosynthesis AT3G07160 64.1 1.9e-70 265.8
Cre03g1665 . 3 176 Cell Wall Biosynthesis AT3G07160 65.3 2.5e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117