Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1684 ATGTTCGGGATGGCGGCGGAGGCAGTGACGACCGTGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTCGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATACTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGCTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATATTTCTCCATCTTTACATCCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAATATTTCCATGGCTAATTCCTTCTTCTAA 513 42.11 MFGMAAEAVTTVAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFAEEYSPPISPPNLPNISPSLHPLIWPFSLLLSINISMANSFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33580065 33581195 - CrPI670011_03g016840.1 Cre03g1684 493714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1684 170 Gene3D - 31 133 IPR008972 -
Cre03g1684 170 FunFam Lamin-like protein 29 132 - -
Cre03g1684 170 PANTHER BLUE COPPER PROTEIN 17 129 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cre03g1684 170 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Cre03g1684 170 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Cre03g1684 170 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1684 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1684 Cre-Chr3:33580065 Cre10g1684 Cre-Chr10:31054948 9.10E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1683 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.5e-38 155.6
Cre08g1316 . 7 169 Phytocyanin Superfamily AT2G25060 54.9 5.2e-45 177.9
Cre10g1683 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.0e-47 184.9
Cre08g1316 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 2.3e-45 179.1
Cre01g1475 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 7.0e-37 151.0
Cre01g1475 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 7.0e-37 151.0
Cre08g1316 . 9 176 Phytocyanin Superfamily AT5G25090 52.0 2.5e-39 159.1
Cre08g1316 . 7 169 Phytocyanin Superfamily AT2G25060 54.9 5.2e-45 177.9
Cre08g1316 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 2.3e-45 179.1
Cre10g1683 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.5e-38 155.6
Cre10g1683 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.0e-47 184.9
Cre02g2575 . 11 229 Phytocyanin Superfamily AT1G08500 56.8 6.2e-64 241.1
Cre03g1684 . 29 135 Phytocyanin Superfamily AT2G27035 59.8 7.2e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49