Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1759 | ATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCCTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGAGCCCCTGCCTTCTCTGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATTATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCACATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACTCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAAGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGAAGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGGTATGTGCTTCTCTTTTTAGATGCTGTGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA | 1890 | 42.96 | MAAAQLTGSLISARNLPSFNGLRPSALKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISSPCLLCRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYYTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSHISTIEEVLNTKSSPSKSLKYDSYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKEGVNVYMMKWDSDHGLMIINHYDYRYVLLFLDAVIVISSKMVQDQSQFHED | 629 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 34438327 | 34447140 | - | CrPI670011_03g017590.1 | Cre03g1759 | 493789 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1759 | 629 | CDD | cpn10 | 162 | 249 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | Gene3D | GroES chaperonin | 158 | 250 | IPR037124 | GO:0006457(InterPro) | |
| Cre03g1759 | 629 | Gene3D | GroES chaperonin | 57 | 157 | IPR037124 | GO:0006457(InterPro) | |
| Cre03g1759 | 629 | SUPERFAMILY | GroES-like | 161 | 249 | IPR011032 | - | |
| Cre03g1759 | 629 | ProSitePatterns | Chaperonins cpn10 signature. | 162 | 186 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| Cre03g1759 | 629 | FunFam | 20 kDa chaperonin, chloroplastic | 57 | 156 | - | - | |
| Cre03g1759 | 629 | SMART | Cpn10_2 | 161 | 253 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | SMART | Cpn10_2 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | Hamap | Co-chaperonin GroES [groES]. | 63 | 155 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | Pfam | Chaperonin 10 Kd subunit | 162 | 249 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | Pfam | Chaperonin 10 Kd subunit | 64 | 153 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | PRINTS | 10kDa chaperonin signature | 64 | 79 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | PRINTS | 10kDa chaperonin signature | 86 | 107 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | PRINTS | 10kDa chaperonin signature | 120 | 132 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | PRINTS | 10kDa chaperonin signature | 141 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | PANTHER | EXPRESSED PROTEIN | 309 | 552 | - | - | |
| Cre03g1759 | 629 | Hamap | Co-chaperonin GroES [groES]. | 161 | 255 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | SUPERFAMILY | GroES-like | 62 | 155 | IPR011032 | - | |
| Cre03g1759 | 629 | CDD | cpn10 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cre03g1759 | 629 | ProSitePatterns | Chaperonins cpn10 signature. | 64 | 88 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| Cre03g1759 | 629 | FunFam | 10 kDa chaperonin | 160 | 250 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1759 | Cre-Chr3:34438327 | Cre06g0778 | Cre-Chr6:1159197 | 4.50E-40 | dispersed | |
| Cre03g1759 | Cre-Chr3:34438327 | Cre05g0378 | Cre-Chr5:3449610 | 7.30E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1759 | K04078 | - | csv:101212396 | 453.366 |