Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g1760 | ATGACGAAGCCGTCGTCCCCTCACAAATCTTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCACGATCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA | 618 | 50.16 | MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPTIDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34460432 | 34461049 | + | CrPI670011_03g017600.1 | Cre03g1760 | 493790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g1760 | 205 | SUPERFAMILY | DNA-binding domain | 20 | 80 | IPR016177 | GO:0003677(InterPro) | |
Cre03g1760 | 205 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cre03g1760 | 205 | Pfam | AP2 domain | 20 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | FunFam | Ethylene-responsive transcription factor 2 | 20 | 79 | - | - | |
Cre03g1760 | 205 | CDD | AP2 | 20 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 123 | IPR051032 | - | |
Cre03g1760 | 205 | Gene3D | AP2/ERF domain | 20 | 79 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre03g1760 | 205 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1760 | Cre-Chr3:34460432 | Cre08g0510 | Cre-Chr8:17583473 | 2.60E-21 | dispersed | |
Cre05g1758 | Cre-Chr5:29369172 | Cre03g1760 | Cre-Chr3:34460432 | 4.50E-31 | transposed | |
Cre08g0912 | Cre-Chr8:22275256 | Cre03g1760 | Cre-Chr3:34460432 | 5.20E-33 | transposed | |
Cre03g1760 | Cre-Chr3:34460432 | Cre09g0121 | Cre-Chr9:1480263 | 7.40E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53356 | PF00847 | AP2 | 8.10E-13 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g1760 | - | - | - | 0.0 |