Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1760 ATGACGAAGCCGTCGTCCCCTCACAAATCTTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCACGATCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.16 MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPTIDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34460432 34461049 + CrPI670011_03g017600.1 Cre03g1760 493790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1760 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Cre03g1760 205 MobiDBLite consensus disorder prediction 1 17 - -
Cre03g1760 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Cre03g1760 205 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 123 IPR051032 -
Cre03g1760 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g1760 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1760 Cre-Chr3:34460432 Cre08g0510 Cre-Chr8:17583473 2.60E-21 dispersed
Cre05g1758 Cre-Chr5:29369172 Cre03g1760 Cre-Chr3:34460432 4.50E-31 transposed
Cre08g0912 Cre-Chr8:22275256 Cre03g1760 Cre-Chr3:34460432 5.20E-33 transposed
Cre03g1760 Cre-Chr3:34460432 Cre09g0121 Cre-Chr9:1480263 7.40E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53356 PF00847 AP2 8.10E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1760 - - - 0.0