Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1770 ATGTATGGAATTTTGATACACACCATCGATTTCGAATTTGTTGCACAACTTTTTGGGCTTCACTACTGGGTTCGACAGTCAAATTCAGGGGCGCCCTTGAATCTATCGGCCAAACCTGATGTGAGCATCGCCGCCTCTGTTCTGTCATCATCAGATATTTCGCTGTCCATCTGTTACAAGCGGGGCTCCTTGCGCCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTCGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCTGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACGCGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTTCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAGGTGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG 1260 46.43 MYGILIHTIDFEFVAQLFGLHYWVRQSNSGAPLNLSAKPDVSIAASVLSSSDISLSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSSKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVAGSESFNIKEFVQKTEGTHA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34561503 34565595 + CrPI670011_03g017700.1 Cre03g1770 493800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1770 419 Gene3D - 44 200 IPR027363 -
Cre03g1770 419 Pfam Initiation factor 2 subunit family 96 397 IPR000649 GO:0044237(InterPro)
Cre03g1770 419 FunFam Methylthioribose-1-phosphate isomerase 210 408 - -
Cre03g1770 419 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 56 398 IPR005251 -
Cre03g1770 419 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 56 412 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Cre03g1770 419 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 81 398 IPR011559 GO:0044249(InterPro)
Cre03g1770 419 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 54 407 IPR005251 -
Cre03g1770 419 SUPERFAMILY NagB/RpiA/CoA transferase-like 56 398 IPR037171 -
Cre03g1770 419 Gene3D - 209 413 IPR042529 -
Cre03g1770 419 FunFam Methylthioribose-1-phosphate isomerase 52 244 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1770 K08963 - csv:101210526 645.195