Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1789 ATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGCTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCATCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTGGAAGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTCGATGATAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 984 42.89 MFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRNPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPWKQQKRDESQKTVHRFFDEWPPKERGSWLDFDDKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34733472 34734615 + CrPI670011_03g017890.1 Cre03g1789 493819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1789 327 Pfam WRC 72 113 IPR014977 -
Cre03g1789 327 PANTHER GROWTH-REGULATING FACTOR 5 3 314 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cre03g1789 327 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre03g1789 327 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre03g1789 327 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Cre03g1789 327 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1789 Cre-Chr3:34733472 Cre08g1614 Cre-Chr8:28619683 2.10E-33 dispersed
Cre02g1098 Cre-Chr2:9461773 Cre03g1789 Cre-Chr3:34733472 1.00E-48 transposed
Cre10g2036 Cre-Chr10:35054146 Cre03g1789 Cre-Chr3:34733472 3.70E-30 transposed
Cre11g0644 Cre-Chr11:3575316 Cre03g1789 Cre-Chr3:34733472 1.50E-78 wgd
Cre03g1789 Cre-Chr3:34733472 Cre07g1767 Cre-Chr7:33169740 2.00E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53359 PF08879 WRC 1.10E-20 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1789 - - - 0.0