Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1794 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAGGGTGAAGAAGGAGTTGATGCAAGTAAAGATCTCACTAAACCCTCAGTTGGTTCTTTCCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGTACAATTCCACAATCCGTAGTTGGGAGTTCTCCTTCACCTGAGATTTCCAGAATGACTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGGCGCCCATCATTTGCTCGTTCATCGTTTTCGAAGCCAAAGTCAAGGCTAATAGAGTCACCTTGTCCTGATGGTGCATATTTAGCAGAAGAAAAGGCTCAAGCAAAATCGACAATCTATAGCTCTTCTAAGGTGGACTCCCCAGCTAAGATAACCACAGTGACTAGTCCAAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAATTGAAAAGAACAGTTTTAATTGAATGGCTTGCATTTTTGTGCTTAACAGGTTGCTTAATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTCCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTTCGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGACTATGGCTGGTGAAAACTTTGTTGGTGAAGACACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATCCTATCAGGACCTCCACTCATGGAGATGGCGGAGAGGGTTGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACTATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCAGAAACGTTGCGAAACCGGGTAGCAAGTATATTGATGAAGATGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTTGAGCGCAAGTCGTTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCCTCTGCAATTGTACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACGACGCAAGTACTCGTCTTCATCTCATCACAGCTTCTGCTCGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATGCTGTTCTAGCCACCAAACCCATCAGTAACTACTACCGGAGCCCCGAAATGGGTGATTCGATCGAATTTTCTGTTGACTTTTCCACTTCAATTGAGAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACATAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTCGTAGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTAGCTCTATGTGTCAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAGTCGAAGATCGGATTTAGTCTTCGAGCTGAAGAGAATTCTCGAAGATCTCAGTATCAAGTATCATCTGCTACCTCAAGAAGTTCATCTCAACTATGTGGGTTCAGCAGCTCCAGTGGTTCCACCCTCTCAAAGATGA 2298 41.64 MADKKGMEQLVLRILEGEEGVDASKDLTKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSPEISRMTPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDGAYLAEEKAQAKSTIYSSSKVDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWLAFLCLTGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFSGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKTLAASFQCARFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNAVLATKPISNYYRSPEMGDSIEFSVDFSTSIESIGALKARIKTYIESKPQFWRPNHSVVVKEIENVNKMKLALCVNHTINFQNYGDKSSRRSDLVFELKRILEDLSIKYHLLPQEVHLNYVGSAAPVVPPSQR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34790252 34792992 - CrPI670011_03g017940.1 Cre03g1794 493824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1794 765 PIRSF Memb_At2g17000 26 764 IPR016688 -
Cre03g1794 765 Gene3D - 594 643 IPR023408 -
Cre03g1794 765 Pfam Mechanosensitive ion channel, beta-domain 587 644 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1794 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 753 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cre03g1794 765 MobiDBLite consensus disorder prediction 51 97 - -
Cre03g1794 765 FunFam Predicted mechanosensitive ion channel 594 643 - -
Cre03g1794 765 SUPERFAMILY Sm-like ribonucleoproteins 584 643 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1794 K22048 - - csv:101209209 1356.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0740 Cre-Chr2:4241553 Cre03g1794 Cre-Chr3:34790252 3.40E-148 dispersed
Cre03g1794 Cre-Chr3:34790252 Cre05g1735 Cre-Chr5:29048443 5.80E-183 dispersed
Cre03g1794 Cre-Chr3:34790252 Cre02g1419 Cre-Chr2:24754828 2.60E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g106 . . . . . . Bma07g00558 . . . . . . . Sed08g0905 . Cpe18g00332 Bhi02g01835 Tan09g1100 Cmetu02g0585 . Hepe09g0905 . . . . . . . . . . . Cone4ag0813 Cone7ag0765 . . . . Blo08g00359 . Bda02g00375 Bda09g01071 Bpe08g00538 . . . . . . . . . . . . . . . . . . . Cla03g01465 Cam03g1541 Cec03g1583 Cco03g1576 Clacu03g1565 Cmu03g2121 Cre03g1794 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0220 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.0 4.1e-153 538.5
Cre08g1108 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.7 3.7e-197 685.3
Cre10g0936 . 89 762 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.9e-190 662.9
Cre08g1108 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.4e-198 688.3
Cre10g0936 . 77 539 Mechanosensitive Ion Channel Family AT1G58200 65.5 8.3e-173 604.4
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 3.1e-260 895.2
Cre02g0740 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 3.3e-238 822.0
Cre02g1419 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.9e-247 851.3
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.7 2.6e-280 961.8
Cre02g0740 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 56.1 3.7e-271 931.4
Cre02g1419 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.7e-237 818.9
Cre02g0740 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 3.2e-222 768.8
Cre02g1419 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.1e-164 575.5
Cre05g1735 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.2 1.9e-183 639.8
Cre05g1735 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.4e-202 702.6
Cre03g1794 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 54.0 1.1e-199 693.7
Cre05g1731 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.1 4.9e-163 572.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47