Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1794 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAGGGTGAAGAAGGAGTTGATGCAAGTAAAGATCTCACTAAACCCTCAGTTGGTTCTTTCCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGTACAATTCCACAATCCGTAGTTGGGAGTTCTCCTTCACCTGAGATTTCCAGAATGACTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGGCGCCCATCATTTGCTCGTTCATCGTTTTCGAAGCCAAAGTCAAGGCTAATAGAGTCACCTTGTCCTGATGGTGCATATTTAGCAGAAGAAAAGGCTCAAGCAAAATCGACAATCTATAGCTCTTCTAAGGTGGACTCCCCAGCTAAGATAACCACAGTGACTAGTCCAAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAATTGAAAAGAACAGTTTTAATTGAATGGCTTGCATTTTTGTGCTTAACAGGTTGCTTAATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTCCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTTCGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGACTATGGCTGGTGAAAACTTTGTTGGTGAAGACACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATCCTATCAGGACCTCCACTCATGGAGATGGCGGAGAGGGTTGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACTATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCAGAAACGTTGCGAAACCGGGTAGCAAGTATATTGATGAAGATGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTTGAGCGCAAGTCGTTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCCTCTGCAATTGTACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACGACGCAAGTACTCGTCTTCATCTCATCACAGCTTCTGCTCGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATGCTGTTCTAGCCACCAAACCCATCAGTAACTACTACCGGAGCCCCGAAATGGGTGATTCGATCGAATTTTCTGTTGACTTTTCCACTTCAATTGAGAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACATAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTCGTAGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTAGCTCTATGTGTCAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAGTCGAAGATCGGATTTAGTCTTCGAGCTGAAGAGAATTCTCGAAGATCTCAGTATCAAGTATCATCTGCTACCTCAAGAAGTTCATCTCAACTATGTGGGTTCAGCAGCTCCAGTGGTTCCACCCTCTCAAAGATGA 2298 41.64 MADKKGMEQLVLRILEGEEGVDASKDLTKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSPEISRMTPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDGAYLAEEKAQAKSTIYSSSKVDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWLAFLCLTGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFSGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKTLAASFQCARFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNAVLATKPISNYYRSPEMGDSIEFSVDFSTSIESIGALKARIKTYIESKPQFWRPNHSVVVKEIENVNKMKLALCVNHTINFQNYGDKSSRRSDLVFELKRILEDLSIKYHLLPQEVHLNYVGSAAPVVPPSQR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34790252 34792992 - CrPI670011_03g017940.1 Cre03g1794 493824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1794 765 PIRSF Memb_At2g17000 26 764 IPR016688 -
Cre03g1794 765 Gene3D - 594 643 IPR023408 -
Cre03g1794 765 Pfam Mechanosensitive ion channel, beta-domain 587 644 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g1794 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 753 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cre03g1794 765 MobiDBLite consensus disorder prediction 51 97 - -
Cre03g1794 765 FunFam Predicted mechanosensitive ion channel 594 643 - -
Cre03g1794 765 SUPERFAMILY Sm-like ribonucleoproteins 584 643 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0740 Cre-Chr2:4241553 Cre03g1794 Cre-Chr3:34790252 3.40E-148 dispersed
Cre03g1794 Cre-Chr3:34790252 Cre05g1735 Cre-Chr5:29048443 5.80E-183 dispersed
Cre03g1794 Cre-Chr3:34790252 Cre02g1419 Cre-Chr2:24754828 2.60E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1794 K22048 - csv:101209209 1356.27