Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1801 ATGAGTGGACCAGTTAACATCATTGTAGGTTCTCATGTCTGGATTGAAGATCCAAAACTAGCTTGGATCGACGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCACGTCAGGGCTACCAATGGGAAAACAGTTGTTACCAATATATCAAAAATATTCCCCAAGGATACTGAAGCACCTGCTGCAGGTGTAGATGACATGACAAAGCTGTCATACTTGCATGAACCTGGGGTTCTGAGCAACTTGGCAACCAGATATGAACTCAATGAAATTTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGATTACCTCATCTTTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACAAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTTGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCTGTTCTTGAAGCATTTGGAAATGCAAAAACTGTCAGGAACAACAATTCAAGTCGCTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTTCGAACTTATTTGCTTGAAAGGTCTCGAGTATGTCAGATCTCGAATCCTGAAAGAAATTATCATTGCTTTTACCTTCTCTGCGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAATTAGCAGACCCTAAATCGTTCCACTACTTAAATCAATCTAGCTGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAATATTGAATTTGCCAAGGGAGAGGAGATTGATTCTTCAGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACAGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAGGATGCACTGATTCAACGTGTTATGGTAACACCAGAAGAGGTTATCACTCGAACTCTTGATCCTGTGGCTGCTTTGGGTAGCAGGGATGCCTTGGCTAAAACGATCTATTCGCGACTCTTTGACTGGCTTGTGGAGAAGATTAACAATTCAATTGGGCAAGACCCGAATTCTAAATCATTGATTGGAGTTCTGGATATTTATGGATTTGAGAGTTTTAAATTCAACAGTTTTGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAACAAATCAATTGGAGTTATATTGAGTTTGTTGATAACCAGGATGTCTTGGATCTGATTGAAAAGAAACCAGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCAACACACGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAACAACAAACGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACAATATCTCATTATGCTGGAGAGGTGACTTATTTGGCAGATCTATTCTTGGATAAAAACAAAGATTACGTGGTAGCAGAACATCAGGCCCTCTTGACAGCTTCAAAATGCCCCTTTGCGAGGGCTTTATTTCCTCCTCAACCAGAGGAAACAGCAAAATCCTCAAAATTTTCTTCCATTGGTTCACGTTTTAAATTACAACTTCAATCTTTAATGGAGACCTTAAATTCAACAGAGCCTCACTACATCAGATGTGTAAAGCCAAATAATGCGCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTACGTTGTGGTGGTGTCCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTCTGGATGGAAACTATGATGACAAGGTAGCATGCCAGATGATCCTGGATAAAATGGGTTTGAAAGGATACCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGGCAGATGGCTTCTCTGGACGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTAGAACATTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTACTCGAGGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGACGGGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGCGATATATTGCCAGGAAATCATACTTAGGTTTGCTCTCATCTGCAATCACATTGCAAACAGGGTTAAGGGCAATGAAGGCTCGCGATGAATTCAGATTCAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACCTGGCGTATTCTTACTATAAGAGACTCCAAAAGGCTGCACTATACACGCAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAAGAAGTCTGAAAATGGCTGCAAGGGAAACTGGAGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATGCTTTACACAGCATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTTGTGGAGGATACCGAAAAAATCAATTCCTTAATGGCTGAGGTGGAGAGTTTAAAGGCTTCACTGCTGTCAGAAAAAACGTCAGCTGAAGAAGCTAGAAGAGCTTGTACAGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGACTTCAAGATGCAGAGCAGAAGGTGGATCAGCTTCAGGAGTCAGTGCAGAGGCTTGAAGAGAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAACAAGCATTGACTATGTCGCCGACAGGAAAAGCTTTGTCTGCTAGACCAAAGTCAATGATTATTCAGAGGACACCAGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCTGATACAACTCTTGCATTATCAAATGTACGTGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGATCTGCTAGTGAAGTGCATATCTCAAGATTTAGGATTTTCCGGAGGCAAACCAATTGCTGCTTGTGTCATATATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACCAGCATATTTGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCCGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTATTGTTGCTTCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCTTCTCCACAAAGTGCTGGACTATCATTTCTTAATGGTCGGGGGCTTGGTAGATTGGACGATTTTCGACAGGTTGAGGCAAAGTATCCAGCACTATTGTTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTAAAGAAAGAGATTTCGCCTTTACTTGGACTATGTATTCAGGCCCCTAGGACATCACGGGCGAGCTTAGTGAAAGGACGCTCCCAAGCAAACGCTATGGCTCAGCAAGCCTTAATTGCACATTGGCAAAGCATTGTGAAAAGCTTAGACAATTATTTGAAGATCATGAAAGCAAACTATGTACCTCCATTCTTGGTCCGCAAAGTTTTCACTCAGATATTCTCATTTATTAATGTCCAACTATTTAACAGCCTTCTTTTGCGGCGGGAGTGTTGTTCATTCAGCAATGGAGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGGAGCAACTGAGGAATATGCAGGTTCTGCCTGGGATGAATTAAAGCACATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACGTTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTGTATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGCGTATCTTCAGAAGTTATTTCGAGCATGCGAATTCTGATGACTGAAGACTCCAACAATGCCATCAGCTCATTCCTGTTAGATGATGACTCTAGTATTCCATTTTCTGTGGATGATATTTCCAAATCAATGAAACAAGTAGATGTAACAGACATAGATCCTCCACCGCTGATACGAGAAAACTCCGGGTTCGGATTTTTGCTTCAACGTGCAGATTATATTAAATTCCATCGACCTAATGACCGAGTTCGAATGGTCATCTGGGTTGAATTTATTTTACCTCTCGTGTTATATCGTCGACAACGAGAGGGTCTTTGTCCAGAAGCCATGTCGCCGACTGTGATCATGTGCTACCATGGAAGCGAACACGAAAGTCCAGAAAACGATCACCATTGCAGTGGTCTTTCTTATATTCATTTGGTTTTTTTCTCCAAGGCCAAGATGTTCAGGTATTTGGCTGAATAA 4836 41.23 MSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISNPERNYHCFYLLCAAPPEEREKYKLADPKSFHYLNQSSCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCPFARALFPPQPEETAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFTRGVLARKLFEQLRREAAALKIQKCFKRYIARKSYLGLLSSAITLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHLAYSYYKRLQKAALYTQCGWRRRVARKELRSLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDALHSMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKASLLSEKTSAEEARRACTDAEAKNVELTKRLQDAEQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDTTLALSNVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPIAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVPDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLDNYLKIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPPLIRENSGFGFLLQRADYIKFHRPNDRVRMVIWVEFILPLVLYRRQREGLCPEAMSPTVIMCYHGSEHESPENDHHCSGLSYIHLVFFSKAKMFRYLAE 1611
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 34849199 34863944 - CrPI670011_03g018010.1 Cre03g1801 493831
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 831 857 - -
Cre03g1801 1611 SMART MYSc_2a 56 733 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 783 812 - -
Cre03g1801 1611 FunFam unconventional myosin-Va 834 881 - -
Cre03g1801 1611 Gene3D - 785 831 - -
Cre03g1801 1611 Gene3D - 832 882 - -
Cre03g1801 1611 Gene3D - 733 784 - -
Cre03g1801 1611 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 735 761 - -
Cre03g1801 1611 FunFam Myosin heavy chain 252 307 - -
Cre03g1801 1611 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 ProSiteProfiles Dilute domain profile. 1162 1473 IPR002710 -
Cre03g1801 1611 FunFam Myosin 2 312 426 - -
Cre03g1801 1611 FunFam Myosin XI D 667 730 - -
Cre03g1801 1611 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cre03g1801 1611 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 SMART iq_5 734 756 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 SMART iq_5 830 852 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 SMART iq_5 757 779 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 SMART iq_5 782 804 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 SMART iq_5 805 827 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 SMART iq_5 853 875 IPR000048 GO:0005515(InterPro)
Cre03g1801 1611 FunFam unconventional myosin-Va 786 833 - -
Cre03g1801 1611 Gene3D - 667 730 - -
Cre03g1801 1611 Coils Coil 877 957 - -
Cre03g1801 1611 Gene3D - 439 623 - -
Cre03g1801 1611 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 PANTHER MYOSIN 12 1471 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cre03g1801 1611 FunFam unconventional myosin-Va 737 785 - -
Cre03g1801 1611 CDD MYSc_Myo11 76 720 IPR036018 -
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 758 787 - -
Cre03g1801 1611 Pfam DIL domain 1348 1452 IPR002710 -
Cre03g1801 1611 Coils Coil 996 1051 - -
Cre03g1801 1611 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cre03g1801 1611 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 806 835 - -
Cre03g1801 1611 SMART DIL_2 1348 1455 IPR002710 -
Cre03g1801 1611 FunFam Class V myosin 439 580 - -
Cre03g1801 1611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Cre03g1801 1611 Gene3D - 252 310 - -
Cre03g1801 1611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Cre03g1801 1611 CDD MyosinXI_CBD 1113 1495 IPR037975 GO:0007015(InterPro)
Cre03g1801 1611 ProSiteProfiles IQ motif profile. 854 883 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2007 Cre-Chr2:33498740 Cre03g1801 Cre-Chr3:34849199 0.00E+00 dispersed
Cre03g1801 Cre-Chr3:34849199 Cre09g0341 Cre-Chr9:3326430 0.00E+00 dispersed
Cre03g1801 Cre-Chr3:34849199 Cre06g0901 Cre-Chr6:2375693 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1801 K10357 - csv:101204300 2913.25