Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1807 ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTATTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACATTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAGCCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTCGACTGCACAAATCTGTCTGCTATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTCGATACGCAGAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCTTTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGGGAAACCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1614 42.63 MENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSTTYSPDDRETILASSGDALSQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34920700 34934166 - CrPI670011_03g018070.1 Cre03g1807 493837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1807 537 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 SUPERFAMILY Protein kinase-like (PK-like) 88 462 IPR011009 -
Cre03g1807 537 SMART pkinase_C_6 414 478 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 Gene3D Transferase(Phosphotransferase) domain 1 312 431 - -
Cre03g1807 537 FunFam Non-specific serine/threonine protein kinase 432 442 - -
Cre03g1807 537 SMART serkin_6 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 FunFam Non-specific serine/threonine protein kinase 312 431 - -
Cre03g1807 537 CDD MobB_NDR_LATS-like 40 101 - -
Cre03g1807 537 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 Pfam Protein kinase domain 107 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 482 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre03g1807 537 Gene3D Transferase(Phosphotransferase) domain 1 186 253 - -
Cre03g1807 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 FunFam Non-specific serine/threonine protein kinase 67 189 - -
Cre03g1807 537 Gene3D Phosphorylase Kinase; domain 1 104 185 - -
Cre03g1807 537 MobiDBLite consensus disorder prediction 1 20 - -
Cre03g1807 537 MobiDBLite consensus disorder prediction 498 537 - -
Cre03g1807 537 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Cre03g1807 537 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Cre03g1807 537 CDD STKc_NDR_like 104 477 - -
Cre03g1807 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1807 537 Gene3D Phosphorylase Kinase; domain 1 432 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1807 Cre-Chr3:34920700 Cre04g2147 Cre-Chr4:38609801 1.00E-178 dispersed
Cre01g1619 Cre-Chr1:29272536 Cre03g1807 Cre-Chr3:34920700 1.10E-17 transposed
Cre06g1468 Cre-Chr6:9225198 Cre03g1807 Cre-Chr3:34920700 8.50E-185 transposed
Cre09g0757 Cre-Chr9:7413606 Cre03g1807 Cre-Chr3:34920700 2.50E-183 transposed
Cre09g2005 Cre-Chr9:39116551 Cre03g1807 Cre-Chr3:34920700 4.30E-68 transposed
Cre03g1807 Cre-Chr3:34920700 Cre05g1972 Cre-Chr5:31843237 8.20E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63993 PF00069 Pkinase 4.50E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1807 K08790 - csv:101208238 998.423