Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1859 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGAAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCTATGACTCGGTCTCTCGGCCGGTCCCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA | 1149 | 51.87 | MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 35516935 | 35518083 | + | CrPI670011_03g018590.1 | Cre03g1859 | 493889 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1859 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Cre03g1859 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872(InterPro) | |
| Cre03g1859 | 382 | FunFam | Zinc finger CCCH domain-containing protein 66 | 92 | 160 | - | - | |
| Cre03g1859 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Cre03g1859 | 382 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
| Cre03g1859 | 382 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
| Cre03g1859 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 159 | IPR000571 | GO:0046872(InterPro) | |
| Cre03g1859 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872(InterPro) | |
| Cre03g1859 | 382 | Gene3D | - | 134 | 198 | - | - | |
| Cre03g1859 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 382 | IPR045234 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1859 | Cre-Chr3:35516935 | Cre05g1935 | Cre-Chr5:31535587 | 2.80E-93 | dispersed | |
| Cre11g0685 | Cre-Chr11:3909882 | Cre03g1859 | Cre-Chr3:35516935 | 1.40E-127 | wgd | |
| Cre03g1859 | Cre-Chr3:35516935 | Cre07g2041 | Cre-Chr7:36029384 | 7.50E-46 | wgd | |
| Cre03g1859 | Cre-Chr3:35516935 | Cre08g1626 | Cre-Chr8:28770826 | 4.50E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53365 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1859 | - | - | - | 0.0 |