Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1876 ATGGGGAGAGCAACCAGATGGTTCAAGAACTTGTTTGGGATTAAGAGAGACAAAGAACCCACGAGAGAAATTTCCAACGCCGGCATCAACAAGGAAAAAAAACCCGCTTCGAATTTCACCGGCGACGCCGAACTCTGCAACAATCCGGCGACAATACCGCCGAATTTGTCAGCGGCGGAAGCGGCTTGGCTCAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCCGCTGCAGCCGACGCCGCAGTTGCTGCAGCACAAGCCGCTGTGGCAGTGGTCCGGCTAACCAGCCACGGGAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGTAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCAATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCGGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCAATGGAAGAAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTAAGCGACGACCTATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCATGACTCTGACTGGTGCGGCGGCGACGACTGGCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTGAGCTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGTGGGGAGAATTTCTTTAAAGGGTACTTGAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGATCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGCAGTCTTAGTGGAGTTAGAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 49.22 MGRATRWFKNLFGIKRDKEPTREISNAGINKEKKPASNFTGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTAMEESPKIVEIDTGRPKSWSRRTNTSASELSDDLFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWCGGDDWRLISTAQSTPRFVSSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGSKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35687450 35688891 - CrPI670011_03g018760.1 Cre03g1876 493906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1876 425 PANTHER IQ-DOMAIN 5-RELATED 6 393 - -
Cre03g1876 425 ProSiteProfiles IQ motif profile. 144 171 - -
Cre03g1876 425 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 ProSiteProfiles IQ motif profile. 120 148 - -
Cre03g1876 425 Pfam Protein of unknown function (DUF4005) 320 388 IPR025064 -
Cre03g1876 425 Gene3D - 118 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1876 Cre-Chr3:35687450 Cre09g0022 Cre-Chr9:555056 5.00E-83 dispersed
Cre02g1965 Cre-Chr2:33076656 Cre03g1876 Cre-Chr3:35687450 3.40E-07 wgd
Cre03g1876 Cre-Chr3:35687450 Cre07g1696 Cre-Chr7:32438663 4.60E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1876 - - - 0.0