Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1876 ATGGGGAGAGCAACCAGATGGTTCAAGAACTTGTTTGGGATTAAGAGAGACAAAGAACCCACGAGAGAAATTTCCAACGCCGGCATCAACAAGGAAAAAAAACCCGCTTCGAATTTCACCGGCGACGCCGAACTCTGCAACAATCCGGCGACAATACCGCCGAATTTGTCAGCGGCGGAAGCGGCTTGGCTCAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCCGCTGCAGCCGACGCCGCAGTTGCTGCAGCACAAGCCGCTGTGGCAGTGGTCCGGCTAACCAGCCACGGGAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGTAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCAATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCGGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCAATGGAAGAAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTAAGCGACGACCTATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCATGACTCTGACTGGTGCGGCGGCGACGACTGGCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTGAGCTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGTGGGGAGAATTTCTTTAAAGGGTACTTGAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGATCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGCAGTCTTAGTGGAGTTAGAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 49.22 MGRATRWFKNLFGIKRDKEPTREISNAGINKEKKPASNFTGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTAMEESPKIVEIDTGRPKSWSRRTNTSASELSDDLFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWCGGDDWRLISTAQSTPRFVSSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGSKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35687450 35688891 - CrPI670011_03g018760.1 Cre03g1876 493906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1876 425 PANTHER IQ-DOMAIN 5-RELATED 6 393 - -
Cre03g1876 425 ProSiteProfiles IQ motif profile. 144 171 - -
Cre03g1876 425 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Cre03g1876 425 ProSiteProfiles IQ motif profile. 120 148 - -
Cre03g1876 425 Pfam Protein of unknown function (DUF4005) 320 388 IPR025064 -
Cre03g1876 425 Gene3D - 118 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1876 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1876 Cre-Chr3:35687450 Cre09g0022 Cre-Chr9:555056 5.00E-83 dispersed
Cre02g1965 Cre-Chr2:33076656 Cre03g1876 Cre-Chr3:35687450 3.40E-07 wgd
Cre03g1876 Cre-Chr3:35687450 Cre07g1696 Cre-Chr7:32438663 4.60E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37