Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1879 ATGACGAAATCTCTTCCTTCTCTTTCTCTTTCTCTTCTCTGTTTTCTGAAACCCATTTCCTTCTTCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGCCAATTCCCAGCTCTACCAACAAGAACACTCTGTTTTACTCCGATTGAACCAGTTTTGGCAAAACCAAGCCCCAATCAGCCATTGGCTCTCCTCGAATGCTTCTCATTGTACATGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGTTTTTCTCTAACTACAATTTGAACGGAACCTTCCCCCCTTTCCTTTGCGATCTCAACAATCTCACCCATCTTGATCTTCAGCTCAATTTCATCACCGGTGGCTTTCCCACCACTCTTTACAATTGTTCGAACCTTAATTACCTTGACCTCTCGCAGAATTACTTCGCCGGGCCGATTCCCGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAATCTCGGCGGGAACAGCTTCTCCGGCGAAATTCCGGTATCTATTTCTCGGTTGTCGGAACTCCGGCACCTTTATCTTTTTGTGAATAAATTCAATGGGACTTACCCATCTGAAATTGGTAACTTGTTGAATCTGGAAGAATTGTTGATGGCTTACAATTCAAATCTACAACCGGCTGAATTGCCTTCCAGTTTCGCACAATTGAAGAAGTTGACTTATATATGGATGACAGAGTCGAACGTAATCGGTGAAATTCCTGAATGGATTGGAAATTTGACCGCCCTCGTGAAATTGGATTTGTCGAAGAACAATTTGACTGGGAAAATCCCCGGCAGTTTGTTTACGTTGAAGAATCTCAGTGTCGTTTATCTGTTTCAGAACAATCTATCAGGAGAAATTCCTCAGCGGATTGATTCTAAAAAAATCACCGAATACGACTTATCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCGATCTACAGGAACTGACGGCTCTGCTTCTGTTTTCAAATCAGTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACAGACGTCAGATTGTTCGACAACAATTTAAACGGTACACTGCCGCCAGATTTCGGGCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATTCCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCTCCGGCGGTAAGCTCATAGGAGTGACTGCTCAAGAGAATAATCTTAGTGGGGAGTTACCAAAATCGCTTGGGAATTGCGATAGCTTGATCATTGTCGATGTTCATAAGAACAATTTTTCAGGGGAAATTCCTGCCGGTCTATGGACGGCTCTGAATTTGACTTATGTAGTGATGAACAACAATTCTTTCACAGGTGATTTTCCTCAGAGAGTCTCGAAGAATCTTGCGAGATTGCAAATTAGCAACAACAAATTTTCAGGGGAAATTCCATCGGATTTATCTTCATTTTGGAATTTGACAGAGTTTGAAGCAAGCAATAATCTGTTGACGGGACAAATTCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACAAGCTTTCGCTTGATGGAAATCAACTCACTGGGGAGCTTCCAAAGAATATCCTTTCATGGAGATCATTGCAGAGTCTTAAACTGAGTCGAAATCGTCTTTCGGGTGAAATACCGGACCAACTTGGCGATTTACCCAACCTTAATGATCTTGATCTCTCGGAGAATCGACTTTCCGGGACGATTCCGACTGAGCTAGGAAAATTGAAACTGAATTTCCTTGACCTCTCTTCAAATTTTCTGTCTGGGACAATCCCATCTGCATTTGAAAATGCAATCTTTGCAAGAAGCTTTTTGAACAATCCAAGTCTTTGTTCGAACAACGCAGTTCTAAATCTCGATGGCTGCAGTTTGAGAACTCCAAATTCGAGAAAGATTTCATCACAGCATCTTGCTCTGATCGTAAGCTTGGGCGTAATAGTATTCATACTCTTTGTAGTTTCTGCTTTGTTCATAATCAAAATCTACAGGAAAACTGGAAATAGAGCAGACGTTGAATGGAAACTGACCTCATTTCAAAGGCTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTGATTGGGAGCGGTGGATCCGGAAAAGTTTATCGGATCCCGGTGAATAGTTTGGGCGAAACAGTGGCTGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTCGAGAAAGAATTCATGGCGGAAGTGAAAATCCTCAGTTCGATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCCTGCGAGACTTCACGGCTTCTCGTTTACGAGTACATGGAGAAGCAAAGCCTCGACAAATGGCTACACAAGAAGAAGAACTCACCGCCGATAATTACAGGGTCGGACCCTATTTGTGGTGTCGCCCTCGATTGGCCAACAAGATTTCAAATTGCAGTAGGGGCAGCGCAAGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTGATTCATAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAATGCCAAAATAGCAGATTTTGGCTTAGCTAAAATGCTCGTAAAGCAAGGGGAATCGGCTTCAGTCTCCGCCGTTGCCGGCTCTTTTGGATACATGGCTCCAGAGTATGCTCAGACACCAAGAGTCAACGAGAAGATCGATGTATTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACCGGGAAGGAAGCTCTCAACGGCGATGCAGACTCGTCTCTGGTGGAGTGGGCTTGGGAGTATATTCAAGAAGGCAAGGCAATAGACGATGCGTTGGATAAGGATGTGAAGGAGCCAAATTATGTTGATGAAATGTGTAGTGTTTTCAAACTGGGTGTGATCTGCACTTCCACTTTGCCCACCAACCGGCCCACCATGAACCAGGCATTGCAAATCTTGATCCGCACTCGGACCTCGGCACCCCAAACCCATGGAGATAAAAAATAG 2997 44.28 MTKSLPSLSLSLLCFLKPISFFFFLLLLCSHHANSQLYQQEHSVLLRLNQFWQNQAPISHWLSSNASHCTWPEIQCTNNSVTALFFSNYNLNGTFPPFLCDLNNLTHLDLQLNFITGGFPTTLYNCSNLNYLDLSQNYFAGPIPDDVDRLSRLQFLNLGGNSFSGEIPVSISRLSELRHLYLFVNKFNGTYPSEIGNLLNLEELLMAYNSNLQPAELPSSFAQLKKLTYIWMTESNVIGEIPEWIGNLTALVKLDLSKNNLTGKIPGSLFTLKNLSVVYLFQNNLSGEIPQRIDSKKITEYDLSENNLTGRIPAAIGDLQELTALLLFSNQLYGEIPESIGRLPLLTDVRLFDNNLNGTLPPDFGRNLILEGFQVNSNKLTGSLPEHLCSGGKLIGVTAQENNLSGELPKSLGNCDSLIIVDVHKNNFSGEIPAGLWTALNLTYVVMNNNSFTGDFPQRVSKNLARLQISNNKFSGEIPSDLSSFWNLTEFEASNNLLTGQIPEELTALSKLNKLSLDGNQLTGELPKNILSWRSLQSLKLSRNRLSGEIPDQLGDLPNLNDLDLSENRLSGTIPTELGKLKLNFLDLSSNFLSGTIPSAFENAIFARSFLNNPSLCSNNAVLNLDGCSLRTPNSRKISSQHLALIVSLGVIVFILFVVSALFIIKIYRKTGNRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMEKQSLDKWLHKKKNSPPIITGSDPICGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKMLVKQGESASVSAVAGSFGYMAPEYAQTPRVNEKIDVFSFGVILLELATGKEALNGDADSSLVEWAWEYIQEGKAIDDALDKDVKEPNYVDEMCSVFKLGVICTSTLPTNRPTMNQALQILIRTRTSAPQTHGDKK 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35730265 35733351 - CrPI670011_03g018790.1 Cre03g1879 493909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1879 998 Gene3D Transferase(Phosphotransferase) domain 1 778 997 - -
Cre03g1879 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g1879 998 CDD STKc_IRAK 704 985 - -
Cre03g1879 998 SMART serkin_6 698 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1879 998 Gene3D Phosphorylase Kinase; domain 1 680 777 - -
Cre03g1879 998 ProSiteProfiles Protein kinase domain profile. 698 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1879 998 FunFam Receptor-like protein kinase HSL1 isoform A 38 189 - -
Cre03g1879 998 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 630 - -
Cre03g1879 998 Pfam Leucine Rich Repeat 463 484 IPR001611 GO:0005515(InterPro)
Cre03g1879 998 Pfam Leucine Rich Repeat 251 271 IPR001611 GO:0005515(InterPro)
Cre03g1879 998 Pfam Leucine Rich Repeat 511 530 IPR001611 GO:0005515(InterPro)
Cre03g1879 998 SUPERFAMILY L domain-like 58 385 - -
Cre03g1879 998 Gene3D Ribonuclease Inhibitor 393 502 IPR032675 -
Cre03g1879 998 Gene3D Ribonuclease Inhibitor 503 626 IPR032675 -
Cre03g1879 998 Gene3D Ribonuclease Inhibitor 297 392 IPR032675 -
Cre03g1879 998 PRINTS Leucine-rich repeat signature 251 264 - -
Cre03g1879 998 PRINTS Leucine-rich repeat signature 557 570 - -
Cre03g1879 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 984 IPR050647 -
Cre03g1879 998 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 194 294 - -
Cre03g1879 998 Gene3D Ribonuclease Inhibitor 38 189 IPR032675 -
Cre03g1879 998 Gene3D Ribonuclease Inhibitor 190 296 IPR032675 -
Cre03g1879 998 SMART LRR_typ_2 319 343 IPR003591 -
Cre03g1879 998 SMART LRR_typ_2 248 272 IPR003591 -
Cre03g1879 998 SMART LRR_typ_2 509 533 IPR003591 -
Cre03g1879 998 SMART LRR_typ_2 557 581 IPR003591 -
Cre03g1879 998 SMART LRR_typ_2 150 174 IPR003591 -
Cre03g1879 998 Pfam Protein kinase domain 700 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g1879 998 SUPERFAMILY RNI-like 302 653 - -
Cre03g1879 998 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524(InterPro)
Cre03g1879 998 FunFam Receptor-like protein kinase HSL1 678 777 - -
Cre03g1879 998 SUPERFAMILY Protein kinase-like (PK-like) 693 983 IPR011009 -
Cre03g1879 998 FunFam Kinase family with leucine-rich repeat domain-containing protein 778 998 - -
Cre03g1879 998 Pfam Leucine rich repeat 534 591 IPR001611 GO:0005515(InterPro)
Cre03g1879 998 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1879 Cre-Chr3:35730265 Cre04g1942 Cre-Chr4:36928772 2.20E-73 dispersed
Cre08g1149 Cre-Chr8:24711175 Cre03g1879 Cre-Chr3:35730265 2.40E-128 transposed
Cre03g1879 Cre-Chr3:35730265 Cre07g2020 Cre-Chr7:35813225 1.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63997 PF00069 Pkinase 5.40E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1879 - - - 0.0