Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1889 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGAAGACGACGACGAAGAGGAGGAGGAATTGAACGACGATCCTTCTCCTTCCACTTCCTCCGCCGGCGCCGTTCCTGTCCCTTCCGTCTCCGCTACCGTCACCGTCGCCACTCCTGCCGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAGCGCCTCGAGACCGCCACCGCCGAGCCTTTGACCTTGCAGGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTTTTGCAGGGGTTTTTGGACTACACGATGCAGCGTGGTACGACTCATCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGCTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGACGACAACGCTTTAGACGATGACGAACCTGCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGTACACGGCCTGGATCGGGAATTAGAATGGACGTTCCGCGTTCGTCTAATGAGAATTTGAGTAAAGAGAAAAACAGTACCTACCACAACAACACCAACAACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGCTGAATACTTCCATGGGAGGAGGGCTCTGTGGTGGAGGCAGAGGGTTTAGTGGATTGGCTTTGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTCGGAGGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1194 51.17 MDPRNDAVFPDEDLEDDEESLDDEDDDEEEEELNDDPSPSTSSAGAVPVPSVSATVTVATPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGIRMDVPRSSNENLSKEKNSTYHNNTNNNENVNNVAVAGLIEETVRSCLSPLFKELLNTSMGGGLCGGGRGFSGLALHPIPLSFGGASINFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35855507 35856700 + CrPI670011_03g018890.1 Cre03g1889 493919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1889 397 MobiDBLite consensus disorder prediction 267 291 - -
Cre03g1889 397 MobiDBLite consensus disorder prediction 1 49 - -
Cre03g1889 397 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 108 204 IPR053932 -
Cre03g1889 397 Coils Coil 14 34 - -
Cre03g1889 397 PANTHER BNAANNG10740D PROTEIN-RELATED 15 394 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre03g1889 397 MobiDBLite consensus disorder prediction 9 36 - -
Cre03g1889 397 Coils Coil 158 178 - -
Cre03g1889 397 MobiDBLite consensus disorder prediction 242 291 - -
Cre03g1889 397 Coils Coil 371 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0500 Cre-Chr2:2142482 Cre03g1889 Cre-Chr3:35855507 9.20E-18 dispersed
Cre03g1889 Cre-Chr3:35855507 Cre04g1850 Cre-Chr4:36213302 1.70E-24 dispersed
Cre02g1955 Cre-Chr2:32952905 Cre03g1889 Cre-Chr3:35855507 4.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53368 PF04504 DUF573 1.40E-34 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1889 - - - 0.0