Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1896 | ATGGTTGTTCCTTTACCTAGGCAGATCGAATACACTGCTGCGTTGGCGGGTTGTGATTGGGCCGTAACGGTCAGTGTGGGAACAGTCAGCACAGGAAGCAATCACGAGCCGAATCGGACCAACGAGAATCCGTCGCCTGTAGCCGCGTCGTCCTCACCATGTGTTTCTGATAATCGCCCTGCAACTGCTCCGGGTCAGACTTCCGGCAACTCTCCGTCCAGTCCTTCATCGTCGCCATCGCTGGCAACAACTCCTCCAGGGGGTGGAAGCGTTACTCCGGTTTCGGTGCCTCCCAATCGCTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTAGGAAATCATCGGATTGATTCTACTGCCAGGGACCAGGGAGATGCTGCTGAGGTGCTCTCGAGACAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTCCTTTCTACGGATTCGGCAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAGGTCGTGATGGTCAATATGACTGTTGATCCTGCACTAGAAGAGCTGGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCTGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGATGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCGTTACTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTGTAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCGGCAGACACATTTAGTGCGAAGGACACTACTAACTTTAATCCGTACAACCCCAAAGTAAGCAAAATTCCTTCTCTTCGCCACTCCAATGATGTTGGAATTTCTTCTGCAAAACCAACATCAGCACTTGAGGAAGGCAGCAGTCAGAACTTTGAAGCGGAGGCCATCTCACTGGTGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCCAGCTCAGGTACTGGGACTTCTCGATGCAAGGGAGCCCATTTTGGTGAGGGTAATGCTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCCTAACAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCGAATATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGGTTGCTTTCAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGTCGTTTTCCAAGAGTTAGTCGCCGACCTAATGATCATAATATGGCATTGTCTTCTTCTTCCAACTCTACTGTCTCTGAAAATGTCAATCCTGGTGGTTCAGGAACATCTACTGACTTGAGTGTATCAATTAGAACTGCTGAAGTTGGAAGTTCTTCATCTAATATGAACTCACGGCCGACATCTGCAGTAATTAAACCTAATATTTTGCCTTTGATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAAAAGGTAGATGCTATTGATGGACGCGATAATTTAATCAGATTTGATAGCCGTAGAAAGTTCACATATGATAGATCTGTTGGGACCAATTTGATATTGAAGGATCCGGGAAGTCCCAGCCTGTTGGTCAATCCAAGTTCGAATAGGTTTGAGCAAGTTTATGACGATGTGGATGTAGGTCAATGTGAAATCCAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCGTATGGAGAAGTCTACCATGCTGATTGGAATGGCACGGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTGCGTCATCCGAATATTGTTCTCTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTACTCCAACAATTGTTCACCGAGATCTGAAATCACCGAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCACGCCTGAAGCACAATACGTTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTCCTTCGGAACGAGCCTTCGAATGAGAAGTCGACGGTTAATTGTAGAATGGGAGGTATTTTCCTAAAGCTTGTCAACAACAGTGGAAACAGGACAACCTGGATGCGCAAGTGCGACGTTTATAGCTTTGGAATAATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTAGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGCCCCTCATTCTCACAATTAGCCAATATTCTGAAGCCACTGCAGCGGCTCGTCCTGCCACCACATTCAGACCAGCCAAGTTCGTCGGTGCTGCAAGAGATTTCTTCTGCCTACTATTGGTTTGCCGTCGAAAATGAGACTTTGTTTGCCTCTTTCACCCTTTCACCCTCCAATAAAGAATGTGAATTGAATGGCACTTTTCGTTTCCAATTTGACCCTTTCGAGTGCAACAATTTTGAATTAGGAAAATCCCATTTCTCCTGA | 3126 | 45.2 | MVVPLPRQIEYTAALAGCDWAVTVSVGTVSTGSNHEPNRTNENPSPVAASSSPCVSDNRPATAPGQTSGNSPSSPSSSPSLATTPPGGGSVTPVSVPPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQGDAAEVLSRQYWEYNLLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIVKLEDEREFLVDLMAAPGTLLPADTFSAKDTTNFNPYNPKVSKIPSLRHSNDVGISSAKPTSALEEGSSQNFEAEAISLVDGKLSYGRTESVPSSSGTGTSRCKGAHFGEGNARLNVNVVPFGQSSEDSKNLFADLNPFQIKGTGKSFIPNKSSDNKIEELQKPNIGHPPVPLWKNRVAFNAVPNKNEYDYMEGRFPRVSRRPNDHNMALSSSSNSTVSENVNPGGSGTSTDLSVSIRTAEVGSSSSNMNSRPTSAVIKPNILPLIDEQNRKSNGEHSGNTDMEDEKVDAIDGRDNLIRFDSRRKFTYDRSVGTNLILKDPGSPSLLVNPSSNRFEQVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKSTVNCRMGGIFLKLVNNSGNRTTWMRKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISSAYYWFAVENETLFASFTLSPSNKECELNGTFRFQFDPFECNNFELGKSHFS | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 35979254 | 35992990 | + | CrPI670011_03g018960.1 | Cre03g1896 | 493926 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1896 | 1041 | SMART | serkin_6 | 686 | 968 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g1896 | 1041 | MobiDBLite | consensus disorder prediction | 599 | 618 | - | - | |
| Cre03g1896 | 1041 | MobiDBLite | consensus disorder prediction | 537 | 564 | - | - | |
| Cre03g1896 | 1041 | Pfam | Protein kinase domain | 689 | 962 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g1896 | 1041 | CDD | STKc_MAP3K-like | 692 | 965 | - | - | |
| Cre03g1896 | 1041 | MobiDBLite | consensus disorder prediction | 532 | 564 | - | - | |
| Cre03g1896 | 1041 | MobiDBLite | consensus disorder prediction | 29 | 102 | - | - | |
| Cre03g1896 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 765 | 972 | - | - | |
| Cre03g1896 | 1041 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 158 | 352 | - | - | |
| Cre03g1896 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 679 | 763 | - | - | |
| Cre03g1896 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 805 | 817 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre03g1896 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 677 | 997 | IPR011009 | - | |
| Cre03g1896 | 1041 | FunFam | Serine/threonine-protein kinase isoform 1 | 677 | 764 | - | - | |
| Cre03g1896 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 692 | 714 | IPR017441 | GO:0005524(InterPro) | |
| Cre03g1896 | 1041 | MobiDBLite | consensus disorder prediction | 602 | 618 | - | - | |
| Cre03g1896 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 686 | 969 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g1896 | 1041 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 85 | 966 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1896 | Cre-Chr3:35979254 | Cre05g1949 | Cre-Chr5:31636477 | 8.20E-188 | dispersed | |
| Cre03g1896 | Cre-Chr3:35979254 | Cre04g1072 | Cre-Chr4:29424234 | 9.20E-123 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 63998 | PF07714 | PK_Tyr_Ser-Thr | 4.40E-57 | CL0016 | Cre | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1896 | - | - | - | 0.0 |