Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g1897 | ATGGATTTTAGGGATTCAATTTTGATGGTGATTGTGGTGTGTTTAGTGGGCTGGCTATGGAGACTTTTTAATTGGATTTGGTTGAGGCCAAAGAAACTTGAGAAGTGCCTGAGAGACCAAGGACTCGCCGGAAATTCTTACCGTCTTTTCTCCGGCGACTTGAACGACATCGCCGCCATGATGAAACAAGCCAAATCCAAACCCATGAGCTTCTCGCATGATATTGCTCCACGTGTCATCCCATCCATACATCATACCATTCACAAATATGGGAAGAATTCATTCATGTGGCTTGGACCATATCCAAGAGTGCACATTACGGATCCTGAGCAATTGAAAGTTGCCTTTTCACAATATAGTGACTTTCAAAAGCCAACTATCAACCCTCTTGTTAGGTTGCTTTTCGATGGACTTGTTAATCATGAAGGAGCACAATGGGCTAAACATAGAAAAATAATCAACCCTGCTTTTCATTTCGAGAAGTTGAAGGACATGGTGCCAACAATGTTTGAGAGTTGCAATTTGATGATTAACAAATGGGAAAGAATGATCTCAAAAGATGGATTTTGTGAATTGGATGTGATGCCTCATTTGCAAAACTTGGCAGCTGATGTCATTTCTCGAACAGCATTTGGAAGCACTTACGAAGAAGGAAAAATTATATTTAGTTACCTAAAAGAATTGCTTAATTTGGTCATTGAAGCTAGTAATACCGTTTACATACCGGGATGGAGGTTTCTACCAACAAAGTCAAACAATAGAATGAAAAAGATAAGTAAAGAAATAAAAACTTTGCTCTTGAATGTTGTCAATAAAAGGCAAAGGGCAATGAAGGAAGGTGAAGACGCTATACATAGTGATTTACTAGGCATTCTCTTAGAATCAAATTTCAATGAAATTCAAGAACATGGAAATGTCAATATTGGAATGAGCATAAACGACTTGGTTCAAGAATGTAAGGTTTTTTATTTTGCTGGCCAAGAAACCACAGCGTTGCTACTAGTTTGGACCATGGTTTTGTTAAGCTCATATACAAAATGGCAAGATCGAGCAAGAGCTGAGGTCTTAGAAGTCTTTGGCAACAACAAACCAGATTTTGATGGTTTAAATCGACTAAAAATTGTTACTATGATTTTGAACGAGGTTCTGAGATTATACCCACCAGCAGGGGTGTTTAGTCGTCGTCTTGTTAAAAAAGAAACAAGACTTGGAAATTTGACTTTTCCACGTGGAGTGTTGTTGAGTTTCCCAATTCTTCTTACCCATCGTGATCCAGAGCTATGGGGTGAAGATGCAAACGAATTTAATCCAGAAAGATTTGCTGAGGGAGTGTCAAAAGCAACCAAAAATCAAACCGGATTCTTCCCCTTTGGTTGGGGTCCTCGAATATGCATTGGACAAAATTTTGCCATGATCGAGGCCAAACTTGCATTGTCCATGATTCTACAACATTTCTCATTTGAACTTTCTTCATCCTATACTCATGCTCCTTCATCCATTTTAACTATTCAACCTCAGCATGGAGCTCATATCATCCTACATAAACTTTTAAGTTAG | 1557 | 38.6 | MDFRDSILMVIVVCLVGWLWRLFNWIWLRPKKLEKCLRDQGLAGNSYRLFSGDLNDIAAMMKQAKSKPMSFSHDIAPRVIPSIHHTIHKYGKNSFMWLGPYPRVHITDPEQLKVAFSQYSDFQKPTINPLVRLLFDGLVNHEGAQWAKHRKIINPAFHFEKLKDMVPTMFESCNLMINKWERMISKDGFCELDVMPHLQNLAADVISRTAFGSTYEEGKIIFSYLKELLNLVIEASNTVYIPGWRFLPTKSNNRMKKISKEIKTLLLNVVNKRQRAMKEGEDAIHSDLLGILLESNFNEIQEHGNVNIGMSINDLVQECKVFYFAGQETTALLLVWTMVLLSSYTKWQDRARAEVLEVFGNNKPDFDGLNRLKIVTMILNEVLRLYPPAGVFSRRLVKKETRLGNLTFPRGVLLSFPILLTHRDPELWGEDANEFNPERFAEGVSKATKNQTGFFPFGWGPRICIGQNFAMIEAKLALSMILQHFSFELSSSYTHAPSSILTIQPQHGAHIILHKLLS | 518 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 35993262 | 36000170 | - | CrPI670011_03g018970.1 | Cre03g1897 | 493927 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g1897 | 518 | FunFam | Cytochrome P450 734A1 | 27 | 517 | - | - | |
| Cre03g1897 | 518 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 10 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Cre03g1897 | 518 | SUPERFAMILY | Cytochrome P450 | 76 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cre03g1897 | 518 | CDD | CYP72 | 80 | 512 | - | - | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 87 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | Pfam | Cytochrome P450 | 87 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre03g1897 | 518 | Gene3D | Cytochrome P450 | 72 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1792 | Cre-Chr3:34759697 | Cre03g1897 | Cre-Chr3:35993262 | 3.90E-143 | dispersed | |
| Cre03g1897 | Cre-Chr3:35993262 | Cre11g2120 | Cre-Chr11:32914293 | 1.70E-218 | dispersed | |
| Cre03g1897 | Cre-Chr3:35993262 | Cre11g0766 | Cre-Chr11:4859582 | 5.10E-114 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g1897 | - | - | - | 0.0 |