Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g1905 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGCGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAGACCATGGGCCCCGACGACATTGCAATTTGAGCAAGAGGGGATCGGTCTACATGAGAGAGAAGAAATAG 924 50.0 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQDTPSRSTNLSQARNEHSLDHGPRRHCNLSKRGSVYMREKK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36090427 36098369 - CrPI670011_03g019050.1 Cre03g1905 493935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g1905 307 MobiDBLite consensus disorder prediction 244 307 - -
Cre03g1905 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983(InterPro)
Cre03g1905 307 MobiDBLite consensus disorder prediction 142 167 - -
Cre03g1905 307 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 231 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre03g1905 307 FunFam Basic helix-loop-helix transcription factor 158 220 - -
Cre03g1905 307 MobiDBLite consensus disorder prediction 80 100 - -
Cre03g1905 307 MobiDBLite consensus disorder prediction 283 307 - -
Cre03g1905 307 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983(InterPro)
Cre03g1905 307 MobiDBLite consensus disorder prediction 78 100 - -
Cre03g1905 307 SMART finulus 169 218 IPR011598 GO:0046983(InterPro)
Cre03g1905 307 MobiDBLite consensus disorder prediction 245 282 - -
Cre03g1905 307 Gene3D - 156 213 IPR036638 GO:0046983(InterPro)
Cre03g1905 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1905 Cre-Chr3:36090427 Cre06g2093 Cre-Chr6:28704313 4.00E-34 dispersed
Cre09g0707 Cre-Chr9:6830245 Cre03g1905 Cre-Chr3:36090427 1.80E-53 transposed
Cre03g1905 Cre-Chr3:36090427 Cre07g2015 Cre-Chr7:35710948 1.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53370 PF00010 HLH 6.60E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g1905 - - - 0.0